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1CID
Asym. Unit
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Asym.Unit (34 KB)
Biol.Unit 1 (29 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF DOMAINS 3 & 4 OF RAT CD4 AND THEIR RELATIONSHIP TO THE NH2-TERMINAL DOMAINS
Authors
:
R. L. Brady, E. J. Dodson, G. Lange
Date
:
28 Jan 93 (Deposition) - 15 Jul 93 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
T-Cell Surface Glycoprotein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. L. Brady, E. J. Dodson, G. G. Dodson, G. Lange, S. J. Davis, A. F. Williams, A. N. Barclay
Crystal Structure Of Domains 3 And 4 Of Rat Cd4: Relation To The Nh2-Terminal Domains.
Science V. 260 979 1993
(for further references see the
PDB file header
)
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: SULFATE ION (SO4a)
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No.
Name
Count
Type
Full Name
1
SO4
1
Ligand/Ion
SULFATE ION
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Sites
(0, 0)
Info
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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;
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Exons
(3, 3)
Info
All Exons
Exon 1.6 (A:1-109)
Exon 1.7 (A:109-177)
Exon 1.8 (A:177-177)
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All Exon Boundaries
1: Boundary 1.5/1.6
2: Boundary 1.6/1.7
3: Boundary 1.7/1.8
4: Boundary 1.8/1.9
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSRNOT00000021915
1
ENSRNOE00000218100
chr4:
161014038-161014018
21
CD4_RAT
-
0
0
-
-
1.2
ENSRNOT00000021915
2
ENSRNOE00000155314
chr4:
161006190-161006104
87
CD4_RAT
1-19
19
0
-
-
1.3
ENSRNOT00000021915
3
ENSRNOE00000155435
chr4:
161005975-161005811
165
CD4_RAT
19-74
56
0
-
-
1.4
ENSRNOT00000021915
4
ENSRNOE00000155527
chr4:
160996878-160996720
159
CD4_RAT
74-127
54
0
-
-
1.5
ENSRNOT00000021915
5
ENSRNOE00000155620
chr4:
160995724-160995488
237
CD4_RAT
127-206
80
0
-
-
1.6
ENSRNOT00000021915
6
ENSRNOE00000155706
chr4:
160993648-160993313
336
CD4_RAT
206-318
113
1
A:1-109
109
1.7
ENSRNOT00000021915
7
ENSRNOE00000155795
chr4:
160990624-160990421
204
CD4_RAT
318-386
69
1
A:109-177
69
1.8
ENSRNOT00000021915
8
ENSRNOE00000155882
chr4:
160989880-160989762
119
CD4_RAT
386-425
40
1
A:177-177
1
1.9
ENSRNOT00000021915
9
ENSRNOE00000155973
chr4:
160989467-160989400
68
CD4_RAT
426-448
23
0
-
-
1.10
ENSRNOT00000021915
10
ENSRNOE00000156068
chr4:
160988864-160988512
353
CD4_RAT
448-457
10
0
-
-
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SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d1cida2 (A:106-177)
2a: SCOP_d1cida1 (A:1-105)
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)
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)
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)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
C2 set domains
(47)
Protein domain
:
CD4 C2-set domains
(31)
Rat (Rattus rattus) [TaxId: 10117]
(1)
1a
d1cida2
A:106-177
Family
:
V set domains (antibody variable domain-like)
(1919)
Protein domain
:
CD4 V-set domains
(31)
Rat (Rattus rattus) [TaxId: 10117]
(1)
2a
d1cida1
A:1-105
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1cidA01 (A:1-106)
1b: CATH_1cidA02 (A:107-177)
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)
Homologous Superfamilies
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)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
Norway rat (Rattus norvegicus)
(32)
1a
1cidA01
A:1-106
1b
1cidA02
A:107-177
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Pfam Domains
(0, 0)
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Chain A
Asymmetric Unit 1
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Asym.Unit (34 KB)
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