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1CGF
Asym. Unit
Info
Asym.Unit (78 KB)
Biol.Unit 1 (37 KB)
Biol.Unit 2 (39 KB)
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(1)
Title
:
CRYSTAL STRUCTURES OF RECOMBINANT 19-KDA HUMAN FIBROBLAST COLLAGENASE COMPLEXED TO ITSELF
Authors
:
B. Lovejoy, A. M. Hassell, M. A. Luther, D. Weigl, S. R. Jordan
Date
:
03 Feb 94 (Deposition) - 31 Mar 95 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Hydrolase (Metalloprotease)
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. Lovejoy, A. M. Hassell, M. A. Luther, D. Weigl, S. R. Jordan
Crystal Structures Of Recombinant 19-Kda Human Fibroblast Collagenase Complexed To Itself.
Biochemistry V. 33 8207 1994
(for further references see the
PDB file header
)
[
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Hetero Components
(2, 10)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
2a: ZINC ION (ZNa)
2b: ZINC ION (ZNb)
2c: ZINC ION (ZNc)
2d: ZINC ION (ZNd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
6
Ligand/Ion
CALCIUM ION
2
ZN
4
Ligand/Ion
ZINC ION
[
close Hetero Component info
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: CTA (UNKNOWN)
12: CTB (UNKNOWN)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:218 , HIS A:222 , HIS A:228
BINDING SITE FOR RESIDUE ZN A 301
02
AC2
SOFTWARE
HIS A:168 , ASP A:170 , HIS A:183 , HIS A:196
BINDING SITE FOR RESIDUE ZN A 302
03
AC3
SOFTWARE
ASP A:175 , GLY A:176 , GLY A:178 , ASN A:180 , ASP A:198 , GLU A:201
BINDING SITE FOR RESIDUE CA A 303
04
AC4
SOFTWARE
ASP A:124 , GLU A:199 , GLU A:201 , HOH A:343 , HOH A:354
BINDING SITE FOR RESIDUE CA A 304
05
AC5
SOFTWARE
ASP A:158 , GLY A:190 , GLY A:192 , ASP A:194 , HOH A:310 , HOH A:319
BINDING SITE FOR RESIDUE CA A 305
06
AC6
SOFTWARE
HIS B:218 , HIS B:222 , HIS B:228
BINDING SITE FOR RESIDUE ZN B 301
07
AC7
SOFTWARE
HIS B:168 , ASP B:170 , HIS B:183 , HIS B:196
BINDING SITE FOR RESIDUE ZN B 302
08
AC8
SOFTWARE
ASP B:175 , GLY B:176 , GLY B:178 , ASN B:180 , ASP B:198 , GLU B:201
BINDING SITE FOR RESIDUE CA B 303
09
AC9
SOFTWARE
ASP B:124 , GLU B:199 , GLU B:201 , HOH B:340 , HOH B:341
BINDING SITE FOR RESIDUE CA B 304
10
BC1
SOFTWARE
ASP B:158 , GLY B:190 , GLY B:192 , ASP B:194 , HOH B:310 , HOH B:377
BINDING SITE FOR RESIDUE CA B 305
11
CTA
UNKNOWN
ZN A:301 , GLY A:179 , ASN A:180 , LEU A:181 , ALA A:182 , GLU A:219 , PRO A:238 , TYR A:240 , ARG A:214 , VAL A:215
NULL
12
CTB
UNKNOWN
ZN B:301 , GLY B:179 , ASN B:180 , LEU B:181 , ALA B:182 , GLU B:219 , PRO B:238 , TYR B:240 , ARG B:214 , VAL B:215
NULL
[
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]
SAPs(SNPs)/Variants
(3, 6)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_021024 (I191V, chain A/B, )
2: VAR_011970 (D252G, chain A/B, )
3: VAR_054005 (R262S, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_021024
I
191
V
MMP1_HUMAN
Polymorphism
17879973
A/B
I
191
V
2
UniProt
VAR_011970
D
252
G
MMP1_HUMAN
Polymorphism
513964
A/B
D
252
G
3
UniProt
VAR_054005
R
262
S
MMP1_HUMAN
Polymorphism
12282811
A/B
R
262
S
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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]
PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: ZINC_PROTEASE (A:215-224,B:215-224)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ZINC_PROTEASE
PS00142
Neutral zinc metallopeptidases, zinc-binding region signature.
MMP1_HUMAN
215-224
2
A:215-224
B:215-224
[
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Exons
(5, 10)
Info
All Exons
Exon 1.2 (A:102-117 | B:102-117)
Exon 1.3 (A:117-167 | B:117-167)
Exon 1.4 (A:167-209 | B:167-209)
Exon 1.5 (A:209-261 | B:209-261)
Exon 1.6 (A:261-263 | B:261-263)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.1/1.2
2: Boundary 1.2/1.3
3: Boundary 1.3/1.4
4: Boundary 1.4/1.5
5: Boundary 1.5/1.6
6: Boundary 1.6/1.7
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000315274
1
ENSE00001234609
chr11:
102668891-102668719
173
MMP1_HUMAN
1-35
35
0
-
-
1.2
ENST00000315274
2
ENSE00000993211
chr11:
102668231-102667987
245
MMP1_HUMAN
36-117
82
2
A:102-117
B:102-117
16
16
1.3
ENST00000315274
3
ENSE00000993213
chr11:
102667893-102667745
149
MMP1_HUMAN
117-167
51
2
A:117-167
B:117-167
51
51
1.4
ENST00000315274
4
ENSE00001105440
chr11:
102667520-102667395
126
MMP1_HUMAN
167-209
43
2
A:167-209
B:167-209
43
43
1.5
ENST00000315274
5
ENSE00000993197
chr11:
102666338-102666183
156
MMP1_HUMAN
209-261
53
2
A:209-261
B:209-261
53
53
1.6
ENST00000315274
6
ENSE00000993183
chr11:
102666022-102665905
118
MMP1_HUMAN
261-300
40
2
A:261-263
B:261-263
3
3
1.7
ENST00000315274
7
ENSE00000993195
chr11:
102663469-102663336
134
MMP1_HUMAN
300-345
46
0
-
-
1.8
ENST00000315274
8
ENSE00000993199
chr11:
102662226-102662064
163
MMP1_HUMAN
345-399
55
0
-
-
1.9
ENST00000315274
9
ENSE00000993204
chr11:
102661537-102661434
104
MMP1_HUMAN
399-434
36
0
-
-
1.10
ENST00000315274
10
ENSE00001234621
chr11:
102661252-102660651
602
MMP1_HUMAN
434-469
36
0
-
-
[
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]
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1cgfa_ (A:)
1b: SCOP_d1cgfb_ (B:)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Zincin-like
(701)
Superfamily
:
Metalloproteases (zincins), catalytic domain
(647)
Family
:
Matrix metalloproteases, catalytic domain
(199)
Protein domain
:
Fibroblast collagenase (MMP-1)
(14)
Human (Homo sapiens) [TaxId: 9606]
(13)
1a
d1cgfa_
A:
1b
d1cgfb_
B:
[
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]
CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1cgfA00 (A:102-263)
1b: CATH_1cgfB00 (B:102-263)
View:
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Classes
(
)
(
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)
Topologies
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)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Collagenase (Catalytic Domain)
(236)
Homologous Superfamily
:
Collagenase (Catalytic Domain)
(234)
Human (Homo sapiens)
(153)
1a
1cgfA00
A:102-263
1b
1cgfB00
B:102-263
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
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(currently selected atoms:
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Asym.Unit (78 KB)
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