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1CG8
Asym. Unit
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Asym.Unit (55 KB)
Biol.Unit 1 (100 KB)
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(1)
Title
:
CO FORM HEMOGLOBIN FROM DASYATIS AKAJEI
Authors
:
K. T. Chong, H. Morimoto
Date
:
26 Mar 99 (Deposition) - 01 Apr 99 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (2x)
Keywords
:
Oxygen Transport
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. T. Chong, G. Miyazaki, H. Morimoto, Y. Oda, S. Y. Park
Structures Of The Deoxy And Co Forms Of Haemoglobin From Dasyatis Akajei, A Cartilaginous Fish.
Acta Crystallogr. , Sect. D V. 55 1291 1999
(for further references see the
PDB file header
)
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: CARBON MONOXIDE (CMOa)
1b: CARBON MONOXIDE (CMOb)
2a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
2b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
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No.
Name
Count
Type
Full Name
1
CMO
2
Ligand/Ion
CARBON MONOXIDE
2
HEM
2
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: HMA (AUTHOR)
6: HMB (AUTHOR)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TYR A:42 , PHE A:43 , LYS A:45 , HIS A:59 , ARG A:62 , LYS A:87 , HIS A:88 , LEU A:92 , ASN A:98 , PHE A:102 , LEU A:136 , CMO A:143
BINDING SITE FOR RESIDUE HEM A 142
2
AC2
SOFTWARE
HIS A:59 , VAL A:63 , HEM A:142
BINDING SITE FOR RESIDUE CMO A 143
3
AC3
SOFTWARE
THR B:38 , LEU B:41 , PHE B:42 , LYS B:44 , HIS B:59 , LYS B:62 , LEU B:84 , LYS B:87 , HIS B:88 , ILE B:91 , ASN B:97 , PHE B:98 , LEU B:101 , LEU B:136 , CMO B:143 , HOH B:193
BINDING SITE FOR RESIDUE HEM B 142
4
AC4
SOFTWARE
PHE B:42 , HIS B:59 , VAL B:63 , HEM B:142
BINDING SITE FOR RESIDUE CMO B 143
5
HMA
AUTHOR
HEM A:142 , HIS A:59 , HIS A:88
O2 BINDING SITE
6
HMB
AUTHOR
HEM B:142 , HIS B:59 , HIS B:88
O2 BINDING SITE
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: GLOBIN (B:3-141,A:14-141)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GLOBIN
PS01033
Globin family profile.
HBB_DASAK
4-142
1
B:3-141
HBA_DASAK
15-142
1
A:14-141
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d1cg8a_ (A:)
2a: SCOP_d1cg8b_ (B:)
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Protein Domains
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(
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Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Globin-like
(1351)
Superfamily
:
Globin-like
(1308)
Family
:
Globins
(1157)
Protein domain
:
Hemoglobin, alpha-chain
(292)
Cartilaginous fish akaei (Dasyatis akajei) [TaxId: 31902]
(2)
1a
d1cg8a_
A:
Protein domain
:
Hemoglobin, beta-chain
(292)
Cartilaginous fish akaei (Dasyatis akajei) [TaxId: 31902]
(2)
2a
d1cg8b_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1cg8A00 (A:1-141)
1b: CATH_1cg8B00 (B:1-141)
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Organisms
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)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Globin-like
(786)
Homologous Superfamily
:
Globins
(743)
Red stingray (Dasyatis akajei)
(2)
1a
1cg8A00
A:1-141
1b
1cg8B00
B:1-141
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Pfam Domains
(0, 0)
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