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1CFM
Asym. Unit
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Asym.Unit (144 KB)
Biol.Unit 1 (139 KB)
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(1)
Title
:
CYTOCHROME F FROM CHLAMYDOMONAS REINHARDTII
Authors
:
Y. I. Chi, L. S. Huang, Z. Zhang, J. G. Fernandez-Velasco, R. Malkin, E. A. Berry
Date
:
18 Sep 98 (Deposition) - 27 Apr 99 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Keywords
:
Cytochrome F, Plastocyanin, Proton Wire, Heme, Electron Transport
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. I. Chi, L. S. Huang, Z. Zhang, J. G. Fernandez-Velasco, E. A. Berry
X-Ray Structure Of A Truncated Form Of Cytochrome F From Chlamydomonas Reinhardtii.
Biochemistry V. 39 7689 2000
(for further references see the
PDB file header
)
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Hetero Components
(1, 3)
Info
All Hetero Components
1a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
1b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
1c: PROTOPORPHYRIN IX CONTAINING FE (HEMc)
View:
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No.
Name
Count
Type
Full Name
1
HEM
3
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TYR A:1 , PHE A:4 , ALA A:5 , TYR A:9 , CYS A:21 , CYS A:24 , HIS A:25 , GLN A:59 , LEU A:69 , ASN A:70 , VAL A:71 , GLY A:72 , MET A:73 , ASN A:153 , GLY A:155 , ARG A:156 , GLY A:157 , VAL A:159 , TYR A:160 , PRO A:161 , HOH A:1100 , HOH A:1337 , HOH A:1381 , ASN C:16 , HOH C:1514
BINDING SITE FOR RESIDUE HEM A 253
2
AC2
SOFTWARE
TYR B:1 , PRO B:2 , PHE B:4 , ALA B:5 , TYR B:9 , VAL B:20 , CYS B:21 , CYS B:24 , HIS B:25 , GLN B:59 , LEU B:69 , ASN B:70 , VAL B:71 , GLY B:72 , MET B:73 , ASN B:153 , GLY B:155 , ARG B:156 , GLY B:157 , VAL B:159 , TYR B:160 , PRO B:161 , HOH B:1458 , HOH B:1925
BINDING SITE FOR RESIDUE HEM B 254
3
AC3
SOFTWARE
TYR C:1 , PRO C:2 , PHE C:4 , ALA C:5 , CYS C:21 , CYS C:24 , HIS C:25 , GLN C:59 , LEU C:69 , ASN C:70 , VAL C:71 , GLY C:72 , MET C:73 , VAL C:74 , ASN C:153 , GLY C:155 , ARG C:156 , GLY C:157 , VAL C:159 , TYR C:160 , PRO C:161 , HOH C:1296 , HOH C:1610 , HOH C:1844
BINDING SITE FOR RESIDUE HEM C 255
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 6)
Info
All SCOP Domains
1a: SCOP_d1cfma2 (A:169-232)
1b: SCOP_d1cfmb2 (B:169-232)
1c: SCOP_d1cfmc2 (C:169-232)
2a: SCOP_d1cfma1 (A:1-168,A:233-251)
2b: SCOP_d1cfmb1 (B:1-168,B:233-251)
2c: SCOP_d1cfmc1 (C:1-168,C:233-251)
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Protein Domains
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(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Barrel-sandwich hybrid
(185)
Superfamily
:
Rudiment single hybrid motif
(69)
Family
:
Cytochrome f, small domain
(12)
Protein domain
:
Cytochrome f, small domain
(12)
Green alga (Chlamydomonas reinhardtii) [TaxId: 3055]
(6)
1a
d1cfma2
A:169-232
1b
d1cfmb2
B:169-232
1c
d1cfmc2
C:169-232
Fold
:
Common fold of diphtheria toxin/transcription factors/cytochrome f
(364)
Superfamily
:
Cytochrome f, large domain
(12)
Family
:
Cytochrome f, large domain
(12)
Protein domain
:
Cytochrome f, large domain
(12)
Green alga (Chlamydomonas reinhardtii) [TaxId: 3055]
(6)
2a
d1cfma1
A:1-168,A:233-251
2b
d1cfmb1
B:1-168,B:233-251
2c
d1cfmc1
C:1-168,C:233-251
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CATH Domains
(2, 6)
Info
all CATH domains
1a: CATH_1cfmA02 (A:171-230)
1b: CATH_1cfmB02 (B:171-230)
1c: CATH_1cfmC02 (C:171-230)
2a: CATH_1cfmA01 (A:1-170,A:231-251)
2b: CATH_1cfmB01 (B:1-170,B:231-251)
2c: CATH_1cfmC01 (C:1-170,C:231-251)
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)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
OB fold (Dihydrolipoamide Acetyltransferase, E2P)
(1040)
Homologous Superfamily
:
[code=2.40.50.100, no name defined]
(113)
Chlamydomonas reinhardtii. Organism_taxid: 3055. Strain: f283st
(1)
1a
1cfmA02
A:171-230
1b
1cfmB02
B:171-230
1c
1cfmC02
C:171-230
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
[code=2.60.40.830, no name defined]
(19)
Chlamydomonas reinhardtii. Organism_taxid: 3055. Strain: f283st
(1)
2a
1cfmA01
A:1-170,A:231-251
2b
1cfmB01
B:1-170,B:231-251
2c
1cfmC01
C:1-170,C:231-251
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Pfam Domains
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