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1CF8
Biol. Unit 2
Info
Asym.Unit (75 KB)
Biol.Unit 1 (70 KB)
Biol.Unit 2 (137 KB)
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(1)
Title
:
CONVERGENCE OF CATALYTIC ANTIBODY AND TERPENE CYCLASE MECHANISMS: POLYENE CYCLIZATION DIRECTED BY CARBOCATION-PI INTERACTIONS
Authors
:
C. M. Paschall, J. Hasserodt, T. Jones, R. A. Lerner, K. D. Janda, D. W. Christianson
Date
:
24 Mar 99 (Deposition) - 28 Jul 99 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : H,L
Biol. Unit 1: H,L (1x)
Biol. Unit 2: H,L (2x)
Keywords
:
Catalytic Antibody, Terpenoid Synthase, Carbocation, Cyclization Cascade
(Keyword Search:
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Reference
:
C. M. Paschall, J. Hasserodt, T. Jones, R. A. Lerner, K. D. Janda, D. W. Christianson
Convergence Of Catalytic Antibody And Terpene Cyclase Mechanisms: Polyene Cyclization Directed By Carbocation-Pi Interactions
Angew. Chem. Int. Ed. Engl. V. 38 1743 1999
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: CADMIUM ION (CDa)
1b: CADMIUM ION (CDb)
2a: 4-{4-[2-(1A,7A-DIMETHYL-4-OXY-OCTA... (HAZa)
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No.
Name
Count
Type
Full Name
1
CD
-1
Ligand/Ion
CADMIUM ION
2
HAZ
2
Ligand/Ion
4-{4-[2-(1A,7A-DIMETHYL-4-OXY-OCTAHYDRO-1-OXA-4-AZA-CYCLOPROPA[A]NAPHTHALEN-4-YL) -ACETYLAMINO]-PHENYLCARBAMOYL}-BUTYRIC ACID
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: DC1 (AUTHOR)
5: DC2 (AUTHOR)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP H:173 , GLU L:81
BINDING SITE FOR RESIDUE CD H 1000
2
AC2
SOFTWARE
GLU L:187 , GLU L:213
BINDING SITE FOR RESIDUE CD L 1001
3
AC3
SOFTWARE
GLY H:32 , TYR H:33 , ALA H:34 , ASN H:35A , ILE H:37 , ILE H:94 , GLY H:95 , TRP H:103 , LYS H:213 , ASP H:214 , HOH H:1103 , TYR L:36 , TRP L:91 , TYR L:96 , CYS L:214
BINDING SITE FOR RESIDUE HAZ H 800
4
DC1
AUTHOR
CD H:1000
THIS IS A FULL OCCUPANCY CD2+ SITE.
5
DC2
AUTHOR
CD L:1001
THIS IS A PARTIAL OCCUPANCY CD2+ SITE.
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: IG_MHC (L:192-198)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
IG_MHC
PS00290
Immunoglobulins and major histocompatibility complex proteins signature.
IGKC_MOUSE
84-90
2
L:192-198
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(4, 4)
Info
All SCOP Domains
1a: SCOP_d1cf8h2 (H:114-215)
2a: SCOP_d1cf8l2 (L:108-214)
3a: SCOP_d1cf8h1 (H:1-113)
4a: SCOP_d1cf8l1 (L:1-107)
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)
Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
(608)
Mouse (Mus musculus) [TaxId: 10090]
(414)
1a
d1cf8h2
H:114-215
Protein domain
:
Immunoglobulin light chain kappa constant domain, CL-kappa
(495)
Mouse (Mus musculus) [TaxId: 10090]
(345)
2a
d1cf8l2
L:108-214
Family
:
V set domains (antibody variable domain-like)
(1919)
Protein domain
:
Immunoglobulin heavy chain variable domain, VH
(658)
Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]
(38)
3a
d1cf8h1
H:1-113
Protein domain
:
Immunoglobulin light chain kappa variable domain, VL-kappa
(616)
Mouse (Mus musculus), cluster 3.1 [TaxId: 10090]
(13)
4a
d1cf8l1
L:1-107
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1cf8L02 (L:109-211)
1b: CATH_1cf8H02 (H:114-212)
1c: CATH_1cf8H01 (H:1-113)
1d: CATH_1cf8L01 (L:1-108)
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)
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)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
House mouse (Mus musculus)
(616)
1a
1cf8L02
L:109-211
1b
1cf8H02
H:114-212
1c
1cf8H01
H:1-113
1d
1cf8L01
L:1-108
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Pfam Domains
(0, 0)
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all PFAM domains
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Asym.Unit (75 KB)
Header - Asym.Unit
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Biol.Unit 2 (137 KB)
Header - Biol.Unit 2
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