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Getting 'Exon' information from database.
1CDR
Asym. Unit
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Asym.Unit (216 KB)
Biol.Unit 1 (23 KB)
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Models
(10 )
Title
:
STRUCTURE OF A SOLUBLE, GLYCOSYLATED FORM OF THE HUMAN COMPLEMENT REGULATORY PROTEIN CD59
Authors
:
C. M. Fletcher, R. A. Harrison, P. J. Lachmann, D. Neuhaus
Date
:
01 Jun 94 (Deposition) - 30 Sep 94 (Release) - 13 Jul 11 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (10 x)
Biol. Unit 1: A (1x)
Keywords
:
Complement Regulatory Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. M. Fletcher, R. A. Harrison, P. J. Lachmann, D. Neuhaus
Structure Of A Soluble, Glycosylated Form Of The Human Complement Regulatory Protein Cd59.
Structure V. 2 185 1994
(for further references see the
PDB file header
)
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Hetero Components
(2, 3)
Info
All Hetero Components
1a: ALPHA-L-FUCOSE (FUCa)
2a: N-ACETYL-D-GLUCOSAMINE (NAGa)
2b: N-ACETYL-D-GLUCOSAMINE (NAGb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
FUC
1
Ligand/Ion
ALPHA-L-FUCOSE
2
NAG
2
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLN A:2 , ALA A:16 , VAL A:17 , ASN A:18 , NAG A:79 , FUC A:80
BINDING SITE FOR RESIDUE NAG A 78
2
AC2
SOFTWARE
NAG A:78
BINDING SITE FOR RESIDUE NAG A 79
3
AC3
SOFTWARE
NAG A:78
BINDING SITE FOR RESIDUE FUC A 80
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
1: VAR_070124 (C64Y, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_070124
C
89
Y
CD59_HUMAN
Disease (HACD59)
---
A
C
64
Y
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: LY6_UPAR (A:2-45)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
LY6_UPAR
PS00983
Ly-6 / u-PAR domain signature.
CD59_HUMAN
27-70
1
A:2-45
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Exons
(2, 2)
Info
All Exons
Exon 1.6b (A:1-32)
Exon 1.8l (A:32-77)
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All Exon Boundaries
1: Boundary 1.5e/1.6b
2: Boundary 1.6b/1.8l
3: Boundary 1.8l/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000395850
1b
ENSE00002148709
chr11:
33757985-33757928
58
CD59_HUMAN
-
0
0
-
-
1.5e
ENST00000395850
5e
ENSE00000824399
chr11:
33744009-33743925
85
CD59_HUMAN
1-23
23
0
-
-
1.6b
ENST00000395850
6b
ENSE00000710249
chr11:
33739017-33738916
102
CD59_HUMAN
23-57
35
1
A:1-32
32
1.8l
ENST00000395850
8l
ENSE00002144344
chr11:
33731889-33730246
1644
CD59_HUMAN
57-128
72
1
A:32-77
46
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1cdra_ (A:)
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Classes
(
)
(
)
Folds
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)
(
)
Superfamilies
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)
(
)
Families
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Small proteins
(3458)
Fold
:
Snake toxin-like
(152)
Superfamily
:
Snake toxin-like
(152)
Family
:
Extracellular domain of cell surface receptors
(39)
Protein domain
:
CD59
(9)
Human (Homo sapiens) [TaxId: 9606]
(9)
1a
d1cdra_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1cdrA00 (A:1-77)
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)
(
)
Organisms
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)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Ribbon
(789)
Topology
:
CD59
(129)
Homologous Superfamily
:
CD59
(129)
Human (Homo sapiens)
(26)
1a
1cdrA00
A:1-77
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Protein
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Chain A
Asymmetric Unit 1
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Asym.Unit (216 KB)
Header - Asym.Unit
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