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1CA9
Asym. Unit
Info
Asym.Unit (197 KB)
Biol.Unit 1 (100 KB)
Biol.Unit 2 (95 KB)
Biol.Unit 3 (191 KB)
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(1)
Title
:
STRUCTURE OF TNF RECEPTOR ASSOCIATED FACTOR 2 IN COMPLEX WITH A PEPTIDE FROM TNF-R2
Authors
:
Y. C. Park, V. Burkitt, A. R. Villa, L. Tong, H. Wu
Date
:
25 Feb 99 (Deposition) - 12 Apr 99 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,G,H (1x)
Biol. Unit 2: D,E,F (1x)
Biol. Unit 3: A,B,C,D,E,F,G,H (1x)
Keywords
:
Tnf Signaling, Traf, Adapter Protein, Cell Survival
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. C. Park, V. Burkitt, A. R. Villa, L. Tong, H. Wu
Structural Basis For Self-Association And Receptor Recognition Of Human Traf2.
Nature V. 398 533 1999
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 6)
Info
All PROSITE Patterns/Profiles
1: MATH (A:351-496,B:351-496,C:351-496,D:35...)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
MATH
PS50144
MATH/TRAF domain profile.
TRAF2_HUMAN
351-496
6
A:351-496
B:351-496
C:351-496
D:351-496
E:351-496
F:351-496
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Exons
(5, 26)
Info
All Exons
Exon 1.15b (A:311-320 | B:311-320 | C:311-320 ...)
Exon 1.16a (A:321-380 | B:321-380 | C:321-380 ...)
Exon 1.18b (A:380-429 | B:380-429 | C:380-429 ...)
Exon 1.19 (A:430-501 | B:430-501 | C:430-501 ...)
Exon 2.11 (G:422-428 | H:419-428 (gaps))
View:
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All Exon Boundaries
1: Boundary 1.14a/1.15b
2: Boundary 1.15b/1.16a
3: Boundary 1.16a/1.18b
4: Boundary 1.18b/1.19
5: Boundary 1.19/-
6: Boundary 2.10/2.11
7: Boundary 2.11/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.4a
ENST00000247668
4a
ENSE00001307288
chr9:
139780970-139780993
24
TRAF2_HUMAN
-
0
0
-
-
1.8
ENST00000247668
8
ENSE00001122187
chr9:
139793165-139793380
216
TRAF2_HUMAN
1-63
63
0
-
-
1.9
ENST00000247668
9
ENSE00001042880
chr9:
139794046-139794124
79
TRAF2_HUMAN
63-89
27
0
-
-
1.10b
ENST00000247668
10b
ENSE00001095643
chr9:
139794874-139794972
99
TRAF2_HUMAN
90-122
33
0
-
-
1.12b
ENST00000247668
12b
ENSE00000870768
chr9:
139802522-139802683
162
TRAF2_HUMAN
123-176
54
0
-
-
1.13b
ENST00000247668
13b
ENSE00000897415
chr9:
139804372-139804446
75
TRAF2_HUMAN
177-201
25
0
-
-
1.14a
ENST00000247668
14a
ENSE00000870769
chr9:
139810993-139811067
75
TRAF2_HUMAN
202-226
25
0
-
-
1.15b
ENST00000247668
15b
ENSE00000870770
chr9:
139814686-139814967
282
TRAF2_HUMAN
227-320
94
6
A:311-320
B:311-320
C:311-320
D:316-320
E:316-320
F:316-320
10
10
10
5
5
5
1.16a
ENST00000247668
16a
ENSE00000870771
chr9:
139815490-139815667
178
TRAF2_HUMAN
321-380
60
6
A:321-380
B:321-380
C:321-380
D:321-380
E:321-380
F:321-380
60
60
60
60
60
60
1.18b
ENST00000247668
18b
ENSE00000985052
chr9:
139818304-139818452
149
TRAF2_HUMAN
380-429
50
6
A:380-429
B:380-429
C:380-429
D:380-429
E:380-429
F:380-429
50
50
50
50
50
50
1.19
ENST00000247668
19
ENSE00001556395
chr9:
139820135-139821059
925
TRAF2_HUMAN
430-501
72
6
A:430-501
B:430-501
C:430-501
D:430-501
E:430-501
F:430-501
72
72
72
72
72
72
2.1
ENST00000376259
1
ENSE00002171992
chr1:
12227060-12227226
167
TNR1B_HUMAN
1-26
26
0
-
-
2.2
ENST00000376259
2
ENSE00001043020
chr1:
12248853-12248952
100
TNR1B_HUMAN
27-60
34
0
-
-
2.3
ENST00000376259
3
ENSE00001043018
chr1:
12251014-12251142
129
TNR1B_HUMAN
60-103
44
0
-
-
2.4a
ENST00000376259
4a
ENSE00001043010
chr1:
12251831-12251980
150
TNR1B_HUMAN
103-153
51
0
-
-
2.5b
ENST00000376259
5b
ENSE00001043008
chr1:
12252488-12252581
94
TNR1B_HUMAN
153-184
32
0
-
-
2.6b
ENST00000376259
6b
ENSE00001166992
chr1:
12252920-12253155
236
TNR1B_HUMAN
184-263
80
0
-
-
2.8
ENST00000376259
8
ENSE00001043005
chr1:
12254012-12254089
78
TNR1B_HUMAN
263-289
27
0
-
-
2.9
ENST00000376259
9
ENSE00001043016
chr1:
12254641-12254675
35
TNR1B_HUMAN
289-300
12
0
-
-
2.10
ENST00000376259
10
ENSE00000818995
chr1:
12262024-12262228
205
TNR1B_HUMAN
301-369
69
0
-
-
2.11
ENST00000376259
11
ENSE00001943748
chr1:
12266797-12269285
2489
TNR1B_HUMAN
369-461
93
2
G:422-428
H:419-428 (gaps)
7
23
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SCOP Domains
(2, 12)
Info
All SCOP Domains
1a: SCOP_d1ca9a1 (A:350-501)
1b: SCOP_d1ca9b1 (B:350-501)
1c: SCOP_d1ca9c1 (C:350-501)
1d: SCOP_d1ca9d1 (D:350-501)
1e: SCOP_d1ca9e1 (E:350-501)
1f: SCOP_d1ca9f1 (F:350-501)
2a: SCOP_d1ca9a2 (A:311-349)
2b: SCOP_d1ca9b2 (B:311-349)
2c: SCOP_d1ca9c2 (C:311-349)
2d: SCOP_d1ca9d2 (D:316-349)
2e: SCOP_d1ca9e2 (E:316-349)
2f: SCOP_d1ca9f2 (F:316-349)
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Protein Domains
(
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(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
TRAF domain-like
(34)
Superfamily
:
TRAF domain-like
(34)
Family
:
MATH domain
(26)
Protein domain
:
TNF receptor associated factor 2 (TRAF2)
(10)
Human (Homo sapiens) [TaxId: 9606]
(10)
1a
d1ca9a1
A:350-501
1b
d1ca9b1
B:350-501
1c
d1ca9c1
C:350-501
1d
d1ca9d1
D:350-501
1e
d1ca9e1
E:350-501
1f
d1ca9f1
F:350-501
Class
:
Coiled coil proteins
(689)
Fold
:
Parallel coiled-coil
(407)
Superfamily
:
Trimerization domain of TRAF
(15)
Family
:
Trimerization domain of TRAF
(15)
Protein domain
:
TRAF2
(10)
Human (Homo sapiens) [TaxId: 9606]
(10)
2a
d1ca9a2
A:311-349
2b
d1ca9b2
B:311-349
2c
d1ca9c2
C:311-349
2d
d1ca9d2
D:316-349
2e
d1ca9e2
E:316-349
2f
d1ca9f2
F:316-349
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CATH Domains
(1, 6)
Info
all CATH domains
1a: CATH_1ca9D00 (D:316-501)
1b: CATH_1ca9E00 (E:316-501)
1c: CATH_1ca9F00 (F:316-501)
1d: CATH_1ca9A00 (A:311-501)
1e: CATH_1ca9B00 (B:311-501)
1f: CATH_1ca9C00 (C:311-501)
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(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A
(23)
Homologous Superfamily
:
Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A
(23)
Human (Homo sapiens)
(21)
1a
1ca9D00
D:316-501
1b
1ca9E00
E:316-501
1c
1ca9F00
F:316-501
1d
1ca9A00
A:311-501
1e
1ca9B00
B:311-501
1f
1ca9C00
C:311-501
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Pfam Domains
(0, 0)
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all PFAM domains
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