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1C9U
Asym. Unit
Info
Asym.Unit (162 KB)
Biol.Unit 1 (156 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE SOLUBLE QUINOPROTEIN GLUCOSE DEHYDROGENASE IN COMPLEX WITH PQQ
Authors
:
A. Oubrie, H. J. Rozeboom, B. W. Dijkstra
Date
:
03 Aug 99 (Deposition) - 04 Feb 00 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Beta-Propeller, Superbarrel, Cofactor Binding, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Oubrie, H. J. Rozeboom, K. H. Kalk, A. J. Olsthoorn, J. A. Duine, B. W. Dijkstra
Structure And Mechanism Of Soluble Quinoprotein Glucose Dehydrogenase.
Embo J. V. 18 5187 1999
(for further references see the
PDB file header
)
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Hetero Components
(3, 12)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
3a: PYRROLOQUINOLINE QUINONE (PQQa)
3b: PYRROLOQUINOLINE QUINONE (PQQb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CA
6
Ligand/Ion
CALCIUM ION
2
GOL
4
Ligand/Ion
GLYCEROL
3
PQQ
2
Ligand/Ion
PYRROLOQUINOLINE QUINONE
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ALA A:269 , TYR A:271 , ASP A:273 , GLU A:309 , HOH A:1020 , HOH A:1056
BINDING SITE FOR RESIDUE CA A 1001
02
AC2
SOFTWARE
GLU A:253 , TYR A:263 , HOH A:1018 , HOH A:1042 , HOH A:1082 , HOH A:1215
BINDING SITE FOR RESIDUE CA A 1002
03
AC3
SOFTWARE
GLY A:247 , PRO A:248 , PQQ A:1004 , HOH A:1049 , HOH A:1198
BINDING SITE FOR RESIDUE CA A 1003
04
AC4
SOFTWARE
ALA B:269 , TYR B:271 , ASP B:273 , GLU B:309 , HOH B:1028 , HOH B:1030
BINDING SITE FOR RESIDUE CA B 1001
05
AC5
SOFTWARE
GLU B:253 , TYR B:263 , HOH B:1027 , HOH B:1040 , HOH B:1051
BINDING SITE FOR RESIDUE CA B 1002
06
AC6
SOFTWARE
GLY B:247 , PRO B:248 , PQQ B:1004 , HOH B:1066 , HOH B:1297
BINDING SITE FOR RESIDUE CA B 1003
07
AC7
SOFTWARE
GLN A:76 , HIS A:144 , ARG A:228 , ASN A:229 , GLN A:231 , GLN A:246 , GLY A:247 , PRO A:248 , TYR A:343 , TRP A:346 , THR A:348 , LEU A:376 , LYS A:377 , ARG A:406 , ARG A:408 , CA A:1003 , GOL A:1005 , HOH A:1178
BINDING SITE FOR RESIDUE PQQ A 1004
08
AC8
SOFTWARE
GLN B:76 , HIS B:144 , ARG B:228 , ASN B:229 , GLN B:231 , GLN B:246 , GLY B:247 , PRO B:248 , TYR B:343 , TRP B:346 , THR B:348 , LEU B:376 , LYS B:377 , ARG B:406 , ARG B:408 , CA B:1003 , GOL B:1005 , HOH B:1158 , HOH B:1240 , HOH B:1297
BINDING SITE FOR RESIDUE PQQ B 1004
09
AC9
SOFTWARE
TYR A:343 , TRP A:346 , PQQ A:1004 , HOH A:1118 , HOH A:1198 , HOH A:1218
BINDING SITE FOR RESIDUE GOL A 1005
10
BC1
SOFTWARE
PQQ B:1004 , HOH B:1246 , HOH B:1253
BINDING SITE FOR RESIDUE GOL B 1005
11
BC2
SOFTWARE
GLN A:179 , HIS A:180 , THR A:181 , ASN A:216 , LYS A:299 , HOH A:1175
BINDING SITE FOR RESIDUE GOL A 1006
12
BC3
SOFTWARE
LEU A:4 , ASP A:335 , CYS A:345 , TRP A:346 , ARG A:378 , HOH A:1102 , HOH A:1122 , HOH A:1250
BINDING SITE FOR RESIDUE GOL A 1007
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1c9ua_ (A:)
1b: SCOP_d1c9ub_ (B:)
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
6-bladed beta-propeller
(327)
Superfamily
:
Soluble quinoprotein glucose dehydrogenase
(4)
Family
:
Soluble quinoprotein glucose dehydrogenase
(4)
Protein domain
:
Soluble quinoprotein glucose dehydrogenase
(4)
Acinetobacter calcoaceticus [TaxId: 471]
(4)
1a
d1c9ua_
A:
1b
d1c9ub_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1c9uA00 (A:1-450)
1b: CATH_1c9uB00 (B:1-452)
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Organisms
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)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
6 Propellor
(215)
Topology
:
Neuraminidase
(215)
Homologous Superfamily
:
TolB, C-terminal domain
(42)
Acinetobacter calcoaceticus. Organism_taxid: 471.
(4)
1a
1c9uA00
A:1-450
1b
1c9uB00
B:1-452
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Asym.Unit (162 KB)
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