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1C7N
Biol. Unit 4
Info
Asym.Unit (572 KB)
Biol.Unit 1 (146 KB)
Biol.Unit 2 (149 KB)
Biol.Unit 3 (147 KB)
Biol.Unit 4 (146 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF CYSTALYSIN FROM TREPONEMA DENTICOLA CONTAINS A PYRIDOXAL 5'-PHOSPHATE COFACTOR
Authors
:
H. I. Krupka, R. Huber, S. C. Holt, T. Clausen
Date
:
16 Mar 00 (Deposition) - 26 Jul 00 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Biol. Unit 4: G,H (1x)
Keywords
:
Transferase, Aminotransferase, Pyridoxal Phosphate
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
H. I. Krupka, R. Huber, S. C. Holt, T. Clausen
Crystal Structure Of Cystalysin From Treponema Denticola: A Pyridoxal 5'-Phosphate-Dependent Protein Acting As A Haemolytic Enzyme.
Embo J. V. 19 3168 2000
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: PYRIDOXAL-5'-PHOSPHATE (PLPa)
1b: PYRIDOXAL-5'-PHOSPHATE (PLPb)
1c: PYRIDOXAL-5'-PHOSPHATE (PLPc)
1d: PYRIDOXAL-5'-PHOSPHATE (PLPd)
1e: PYRIDOXAL-5'-PHOSPHATE (PLPe)
1f: PYRIDOXAL-5'-PHOSPHATE (PLPf)
1g: PYRIDOXAL-5'-PHOSPHATE (PLPg)
1h: PYRIDOXAL-5'-PHOSPHATE (PLPh)
View:
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Label:
No.
Name
Count
Type
Full Name
1
PLP
2
Ligand/Ion
PYRIDOXAL-5'-PHOSPHATE
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Sites
(2, 2)
Info
All Sites
1: AC7 (SOFTWARE)
2: AC8 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC7
SOFTWARE
GLY G:97 , VAL G:98 , VAL G:99 , TYR G:123 , CYS G:171 , ASN G:175 , ASP G:203 , ILE G:205 , HIS G:206 , LYS G:238 , HOH G:445 , HOH G:561 , HOH G:708 , TYR H:64
BINDING SITE FOR RESIDUE PLP G 400
2
AC8
SOFTWARE
TYR G:64 , GLY H:97 , VAL H:98 , TYR H:123 , CYS H:171 , ASN H:175 , ASP H:203 , ILE H:205 , HIS H:206 , SER H:237 , LYS H:238 , HOH H:420 , HOH H:561
BINDING SITE FOR RESIDUE PLP H 400
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d1c7na_ (A:)
1b: SCOP_d1c7nb_ (B:)
1c: SCOP_d1c7nc_ (C:)
1d: SCOP_d1c7nd_ (D:)
1e: SCOP_d1c7ne_ (E:)
1f: SCOP_d1c7nf_ (F:)
1g: SCOP_d1c7ng_ (G:)
1h: SCOP_d1c7nh_ (H:)
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Protein Domains
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Organisms
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(
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
PLP-dependent transferase-like
(627)
Superfamily
:
PLP-dependent transferases
(625)
Family
:
Cystathionine synthase-like
(64)
Protein domain
:
Cystalysin
(2)
Treponema denticola [TaxId: 158]
(2)
1a
d1c7na_
A:
1b
d1c7nb_
B:
1c
d1c7nc_
C:
1d
d1c7nd_
D:
1e
d1c7ne_
E:
1f
d1c7nf_
F:
1g
d1c7ng_
G:
1h
d1c7nh_
H:
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CATH Domains
(2, 16)
Info
all CATH domains
1a: CATH_1c7nA02 (A:63-287)
1b: CATH_1c7nB02 (B:63-287)
1c: CATH_1c7nC02 (C:63-287)
1d: CATH_1c7nD02 (D:63-287)
1e: CATH_1c7nE02 (E:63-287)
1f: CATH_1c7nF02 (F:63-287)
1g: CATH_1c7nG02 (G:63-287)
1h: CATH_1c7nH02 (H:63-287)
2a: CATH_1c7nA01 (A:1-62,A:288-389)
2b: CATH_1c7nB01 (B:1-62,B:288-389)
2c: CATH_1c7nC01 (C:1-62,C:288-389)
2d: CATH_1c7nD01 (D:1-62,D:288-389)
2e: CATH_1c7nE01 (E:1-62,E:288-389)
2f: CATH_1c7nF01 (F:1-62,F:288-389)
2g: CATH_1c7nG01 (G:1-62,G:288-389)
2h: CATH_1c7nH01 (H:1-62,H:288-389)
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Organisms
(
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(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Aspartate Aminotransferase; domain 2
(384)
Homologous Superfamily
:
Type I PLP-dependent aspartate aminotransferase-like (Major domain)
(384)
Treponema denticola. Organism_taxid: 158.
(2)
1a
1c7nA02
A:63-287
1b
1c7nB02
B:63-287
1c
1c7nC02
C:63-287
1d
1c7nD02
D:63-287
1e
1c7nE02
E:63-287
1f
1c7nF02
F:63-287
1g
1c7nG02
G:63-287
1h
1c7nH02
H:63-287
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Aspartate Aminotransferase, domain 1
(355)
Homologous Superfamily
:
Aspartate Aminotransferase, domain 1
(354)
Treponema denticola. Organism_taxid: 158.
(2)
2a
1c7nA01
A:1-62,A:288-389
2b
1c7nB01
B:1-62,B:288-389
2c
1c7nC01
C:1-62,C:288-389
2d
1c7nD01
D:1-62,D:288-389
2e
1c7nE01
E:1-62,E:288-389
2f
1c7nF01
F:1-62,F:288-389
2g
1c7nG01
G:1-62,G:288-389
2h
1c7nH01
H:1-62,H:288-389
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (572 KB)
Header - Asym.Unit
Biol.Unit 1 (146 KB)
Header - Biol.Unit 1
Biol.Unit 2 (149 KB)
Header - Biol.Unit 2
Biol.Unit 3 (147 KB)
Header - Biol.Unit 3
Biol.Unit 4 (146 KB)
Header - Biol.Unit 4
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