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1C7G
Asym. Unit
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Asym.Unit (261 KB)
Biol.Unit 1 (256 KB)
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(1)
Title
:
TYROSINE PHENOL-LYASE FROM ERWINIA HERBICOLA
Authors
:
B. Mikami, Y. Yamamoto, T. Katayama, H. Suzuki
Date
:
18 Feb 00 (Deposition) - 09 Dec 03 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Lyase, Tyrosine Degradation, Pyridoxal 5'-Phosphate Dependent
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. Mikami, Y. Yamamoto, T. Katayama, H. Suzuki, H. Kumagai
The Structure Of Tyrosine Phenol-Lyase From Erwinia Herbicola
To Be Published
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Hetero Components
(1, 4)
Info
All Hetero Components
1a: PYRIDOXAL-5'-PHOSPHATE (PLPa)
1b: PYRIDOXAL-5'-PHOSPHATE (PLPb)
1c: PYRIDOXAL-5'-PHOSPHATE (PLPc)
1d: PYRIDOXAL-5'-PHOSPHATE (PLPd)
View:
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Label:
No.
Name
Count
Type
Full Name
1
PLP
4
Ligand/Ion
PYRIDOXAL-5'-PHOSPHATE
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLN A:98 , GLY A:99 , ARG A:100 , GLU A:103 , PHE A:123 , ASP A:214 , THR A:216 , ARG A:217 , SER A:254 , LYS A:257 , HOH A:543 , HOH A:682
BINDING SITE FOR RESIDUE PLP A 1000
2
AC2
SOFTWARE
GLN B:98 , GLY B:99 , ARG B:100 , GLU B:103 , PHE B:123 , ASP B:214 , THR B:216 , ARG B:217 , SER B:254 , LYS B:257 , HOH B:554
BINDING SITE FOR RESIDUE PLP B 1000
3
AC3
SOFTWARE
GLN C:98 , GLY C:99 , ARG C:100 , GLU C:103 , PHE C:123 , ASP C:214 , THR C:216 , ARG C:217 , SER C:254 , LYS C:257 , HOH C:767 , HOH C:811
BINDING SITE FOR RESIDUE PLP C 1000
4
AC4
SOFTWARE
GLN D:98 , GLY D:99 , ARG D:100 , GLU D:103 , PHE D:123 , ASP D:214 , THR D:216 , ARG D:217 , SER D:254 , LYS D:257 , HOH D:920
BINDING SITE FOR RESIDUE PLP D 1000
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SAPs(SNPs)/Variants
(4, 16)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_TPL_ENTAG_001 (D157N, chain A/B/C/D, )
2: VAR_TPL_ENTAG_002 (F212Y, chain A/B/C/D, )
3: VAR_TPL_ENTAG_003 (R397S, chain A/B/C/D, )
4: VAR_TPL_ENTAG_004 (V420I, chain A/B/C/D, )
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_TPL_ENTAG_001
*
D
157
N
TPL_ENTAG
---
---
A/B/C/D
D
157
N
2
UniProt
VAR_TPL_ENTAG_002
*
F
212
Y
TPL_ENTAG
---
---
A/B/C/D
F
212
Y
3
UniProt
VAR_TPL_ENTAG_003
*
R
397
S
TPL_ENTAG
---
---
A/B/C/D
R
397
S
4
UniProt
VAR_TPL_ENTAG_004
*
V
420
I
TPL_ENTAG
---
---
A/B/C/D
V
420
I
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: BETA_ELIM_LYASE (A:247-265,B:247-265,C:247-265,D:24...)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
BETA_ELIM_LYASE
PS00853
Beta-eliminating lyases pyridoxal-phosphate attachment site.
TPL_ENTAG
247-265
4
A:247-265
B:247-265
C:247-265
D:247-265
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1c7ga_ (A:)
1b: SCOP_d1c7gb_ (B:)
1c: SCOP_d1c7gc_ (C:)
1d: SCOP_d1c7gd_ (D:)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
PLP-dependent transferase-like
(627)
Superfamily
:
PLP-dependent transferases
(625)
Family
:
Beta-eliminating lyases
(16)
Protein domain
:
Tyrosine phenol-lyase
(3)
Erwinia herbicola [TaxId: 549]
(1)
1a
d1c7ga_
A:
1b
d1c7gb_
B:
1c
d1c7gc_
C:
1d
d1c7gd_
D:
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CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_1c7gA02 (A:58-310)
1b: CATH_1c7gB02 (B:58-310)
1c: CATH_1c7gC02 (C:58-310)
1d: CATH_1c7gD02 (D:58-310)
2a: CATH_1c7gA01 (A:2-57,A:311-453)
2b: CATH_1c7gB01 (B:2-57,B:311-453)
2c: CATH_1c7gC01 (C:2-57,C:311-453)
2d: CATH_1c7gD01 (D:2-57,D:311-453)
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)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Aspartate Aminotransferase; domain 2
(384)
Homologous Superfamily
:
Type I PLP-dependent aspartate aminotransferase-like (Major domain)
(384)
Gypsophilae (Pantoea agglomerans pv)
(1)
1a
1c7gA02
A:58-310
1b
1c7gB02
B:58-310
1c
1c7gC02
C:58-310
1d
1c7gD02
D:58-310
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Aspartate Aminotransferase, domain 1
(355)
Homologous Superfamily
:
Aspartate Aminotransferase, domain 1
(354)
Gypsophilae (Pantoea agglomerans pv)
(1)
2a
1c7gA01
A:2-57,A:311-453
2b
1c7gB01
B:2-57,B:311-453
2c
1c7gC01
C:2-57,C:311-453
2d
1c7gD01
D:2-57,D:311-453
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Asym.Unit (261 KB)
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