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1C4K
Asym. Unit
Info
Asym.Unit (117 KB)
Biol.Unit 1 (223 KB)
Biol.Unit 2 (223 KB)
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(1)
Title
:
ORNITHINE DECARBOXYLASE MUTANT (GLY121TYR)
Authors
:
J. Vitali, M. L. Hackert
Date
:
26 Aug 99 (Deposition) - 26 Feb 00 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Biol. Unit 2: A (2x)
Keywords
:
Decarboxylase, Ornithine, Lyase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
J. Vitali, D. Carroll, R. G. Chaudhry, M. L. Hackert
Three-Dimensional Structure Of The Gly121Tyr Dimeric Form O Ornithine Decarboxylase From Lactobacillus 30A.
Acta Crystallogr. , Sect. D V. 55 1978 1999
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: GUANOSINE-5'-TRIPHOSPHATE (GTPa)
2a: PYRIDOXAL-5'-PHOSPHATE (PLPa)
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Label:
No.
Name
Count
Type
Full Name
1
GTP
1
Ligand/Ion
GUANOSINE-5'-TRIPHOSPHATE
2
PLP
1
Ligand/Ion
PYRIDOXAL-5'-PHOSPHATE
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY A:197 , SER A:198 , SER A:199 , ASN A:202 , HIS A:223 , GLN A:288 , ASP A:316 , ALA A:318 , SER A:352 , HIS A:354 , LYS A:355 , SER A:394 , THR A:395 , SER A:396
BINDING SITE FOR RESIDUE PLP A 955
2
AC2
SOFTWARE
HIS A:171 , GLU A:179 , LYS A:180 , LYS A:190 , THR A:191 , TYR A:192 , LYS A:374 , TYR A:379 , ASP A:381 , HIS A:382 , LYS A:383 , HOH A:1165 , HOH A:1170
BINDING SITE FOR RESIDUE GTP A 999
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: OKR_DC_1 (A:350-364)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
OKR_DC_1
PS00703
Orn/Lys/Arg decarboxylases family 1 pyridoxal-P attachment site.
DCOR_LACS3
351-365
1
A:350-364
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 3)
Info
All SCOP Domains
1a: SCOP_d1c4ka3 (A:570-730)
2a: SCOP_d1c4ka1 (A:1-107)
3a: SCOP_d1c4ka2 (A:108-569)
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Protein Domains
(
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(
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Organisms
(
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(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Ornithine decarboxylase C-terminal domain
(2)
Superfamily
:
Ornithine decarboxylase C-terminal domain
(2)
Family
:
Ornithine decarboxylase C-terminal domain
(2)
Protein domain
:
Ornithine decarboxylase C-terminal domain
(2)
Lactobacillus sp., strain 30a [TaxId: 1591]
(2)
1a
d1c4ka3
A:570-730
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Flavodoxin-like
(1057)
Superfamily
:
CheY-like
(258)
Family
:
Ornithine decarboxylase N-terminal wing domain
(2)
Protein domain
:
Ornithine decarboxylase N-terminal wing domain
(2)
Lactobacillus sp., strain 30a [TaxId: 1591]
(2)
2a
d1c4ka1
A:1-107
Fold
:
PLP-dependent transferase-like
(627)
Superfamily
:
PLP-dependent transferases
(625)
Family
:
Ornithine decarboxylase major domain
(2)
Protein domain
:
Ornithine decarboxylase major domain
(2)
Lactobacillus sp., strain 30a [TaxId: 1591]
(2)
3a
d1c4ka2
A:108-569
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CATH Domains
(4, 4)
Info
all CATH domains
1a: CATH_1c4kA02 (A:108-420)
2a: CATH_1c4kA01 (A:1-107)
3a: CATH_1c4kA03 (A:421-600)
4a: CATH_1c4kA04 (A:601-729)
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Organisms
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(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Aspartate Aminotransferase; domain 2
(384)
Homologous Superfamily
:
Type I PLP-dependent aspartate aminotransferase-like (Major domain)
(384)
30a (Lactobacillus sp)
(2)
1a
1c4kA02
A:108-420
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.220, no name defined]
(2)
30a (Lactobacillus sp)
(2)
2a
1c4kA01
A:1-107
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Aspartate Aminotransferase, domain 1
(355)
Homologous Superfamily
:
Aspartate Aminotransferase, domain 1
(354)
30a (Lactobacillus sp)
(2)
3a
1c4kA03
A:421-600
Topology
:
Ornithine Decarboxylase; Chain A, domain 4
(2)
Homologous Superfamily
:
Ornithine Decarboxylase, subunit A, domain 4
(2)
30a (Lactobacillus sp)
(2)
4a
1c4kA04
A:601-729
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Pfam Domains
(0, 0)
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Chain A
Asymmetric Unit 1
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Asym.Unit (117 KB)
Header - Asym.Unit
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Header - Biol.Unit 1
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