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1C1X
Asym. Unit
Info
Asym.Unit (129 KB)
Biol.Unit 1 (123 KB)
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(1)
Title
:
L-PHENYLALANINE DEHYDROGENASE STRUCTURE IN TERNARY COMPLEX WITH NAD+ AND L-3-PHENYLLACTATE
Authors
:
J. L. Vanhooke, J. B. Thoden
Date
:
22 Jul 99 (Deposition) - 30 Aug 00 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.40
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Amino Acid Dehydrogenase, Oxidative Deamination Mechanism, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. M. Brunhuber, J. B. Thoden, J. S. Blanchard, J. L. Vanhooke
Rhodococcus L-Phenylalanine Dehydrogenase: Kinetics, Mechanism, And Structural Basis For Catalytic Specificity.
Biochemistry V. 39 9174 2000
(for further references see the
PDB file header
)
[
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Hetero Components
(6, 13)
Info
All Hetero Components
1a: ALPHA-HYDROXY-BETA-PHENYL-PROPIONI... (HFAa)
1b: ALPHA-HYDROXY-BETA-PHENYL-PROPIONI... (HFAb)
2a: ISOPROPYL ALCOHOL (IPAa)
2b: ISOPROPYL ALCOHOL (IPAb)
2c: ISOPROPYL ALCOHOL (IPAc)
3a: POTASSIUM ION (Ka)
3b: POTASSIUM ION (Kb)
3c: POTASSIUM ION (Kc)
3d: POTASSIUM ION (Kd)
5a: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADa)
5b: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADb)
4a: SODIUM ION (NAa)
6a: PHOSPHATE ION (PO4a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
HFA
2
Ligand/Ion
ALPHA-HYDROXY-BETA-PHENYL-PROPIONIC ACID
2
IPA
3
Ligand/Ion
ISOPROPYL ALCOHOL
3
K
4
Ligand/Ion
POTASSIUM ION
4
NA
1
Ligand/Ion
SODIUM ION
5
NAD
2
Ligand/Ion
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
6
PO4
1
Ligand/Ion
PHOSPHATE ION
[
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]
Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:118 , THR A:121 , HOH A:1488 , HOH A:1574
BINDING SITE FOR RESIDUE K A 850
02
AC2
SOFTWARE
LEU B:170 , SER B:172 , ASP B:174 , LEU B:176 , PO4 B:880 , HOH B:1187 , HOH B:1408
BINDING SITE FOR RESIDUE K B 851
03
AC3
SOFTWARE
ASP B:118 , THR B:121 , HOH B:1511 , HOH B:1645 , HOH B:1762
BINDING SITE FOR RESIDUE K B 852
04
AC4
SOFTWARE
TRP A:8 , GLY A:10 , HOH A:1868 , ARG B:16 , PHE B:17
BINDING SITE FOR RESIDUE K A 853
05
AC5
SOFTWARE
ARG A:87 , TRP A:95 , ASN A:120 , ASN A:122 , ASP A:125
BINDING SITE FOR RESIDUE NA A 855
06
AC6
SOFTWARE
SER B:1 , SER B:4 , THR B:54 , LYS B:58 , LEU B:170 , LEU B:176 , K B:851 , HOH B:1040 , HOH B:1175 , HOH B:1408 , HOH B:1419 , HOH B:1608
BINDING SITE FOR RESIDUE PO4 B 880
07
AC7
SOFTWARE
GLY A:39 , GLY A:40 , MET A:63 , LYS A:66 , LYS A:78 , PRO A:117 , PHE A:137 , ALA A:292 , NAD A:360 , HOH A:1021 , HOH A:1171
BINDING SITE FOR RESIDUE HFA A 361
08
AC8
SOFTWARE
ASP A:118 , SER A:149 , THR A:153 , GLY A:182 , LEU A:183 , GLY A:184 , ALA A:185 , VAL A:186 , ASP A:205 , THR A:206 , ARG A:210 , LEU A:224 , CYS A:238 , ALA A:239 , MET A:240 , ALA A:260 , ALA A:261 , ASN A:262 , ASN A:288 , HFA A:361 , HOH A:1079 , HOH A:1171 , HOH A:1284 , HOH A:1311 , HOH A:1488 , HOH A:1582 , HOH A:1588 , HOH A:1600 , HOH A:1746 , HOH A:1813
BINDING SITE FOR RESIDUE NAD A 360
09
AC9
SOFTWARE
SER B:149 , THR B:153 , GLY B:182 , GLY B:184 , ALA B:185 , VAL B:186 , ASP B:205 , THR B:206 , ARG B:210 , CYS B:238 , ALA B:239 , MET B:240 , ALA B:260 , ALA B:261 , ASN B:262 , ASN B:288 , HFA B:761 , HOH B:1027 , HOH B:1173 , HOH B:1274 , HOH B:1511 , HOH B:1618
BINDING SITE FOR RESIDUE NAD B 760
10
BC1
SOFTWARE
GLY B:39 , GLY B:40 , MET B:63 , LYS B:66 , LYS B:78 , GLY B:116 , PRO B:117 , PHE B:137 , LEU B:295 , NAD B:760 , HOH B:1173 , HOH B:1890
BINDING SITE FOR RESIDUE HFA B 761
11
BC2
SOFTWARE
ALA A:276 , HOH A:1294 , LEU B:34 , GLY B:35 , PRO B:73
BINDING SITE FOR RESIDUE IPA B 860
12
BC3
SOFTWARE
THR A:15 , LEU A:49 , LEU B:6 , THR B:13 , ARG B:28 , HOH B:1062
BINDING SITE FOR RESIDUE IPA B 861
13
BC4
SOFTWARE
TYR B:46 , SER B:47 , LEU B:49 , ALA B:82 , HOH B:1097 , HOH B:1247
BINDING SITE FOR RESIDUE IPA B 862
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1c1xa2 (A:1-148)
1b: SCOP_d1c1xb2 (B:1-148)
2a: SCOP_d1c1xa1 (A:149-348)
2b: SCOP_d1c1xb1 (B:149-347)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Aminoacid dehydrogenase-like, N-terminal domain
(100)
Superfamily
:
Aminoacid dehydrogenase-like, N-terminal domain
(100)
Family
:
Aminoacid dehydrogenases
(28)
Protein domain
:
Phenylalanine dehydrogenase
(4)
Rhodococcus sp., M4 [TaxId: 1831]
(4)
1a
d1c1xa2
A:1-148
1b
d1c1xb2
B:1-148
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
Aminoacid dehydrogenase-like, C-terminal domain
(67)
Protein domain
:
Phenylalanine dehydrogenase
(4)
Rhodococcus sp., M4 [TaxId: 1831]
(4)
2a
d1c1xa1
A:149-348
2b
d1c1xb1
B:149-347
[
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1c1xA01 (A:3-64,A:75-136,A:339-348)
1b: CATH_1c1xB01 (B:3-64,B:75-136,B:339-347)
2a: CATH_1c1xA02 (A:137-338)
2b: CATH_1c1xB02 (B:137-338)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Leucine Dehydrogenase; Chain A, domain 1
(52)
Homologous Superfamily
:
Leucine Dehydrogenase, chain A, domain 1
(52)
Rhodococcus sp.. Organism_taxid: 1831.
(2)
1a
1c1xA01
A:3-64,A:75-136,A:339-348
1b
1c1xB01
B:3-64,B:75-136,B:339-347
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
Rhodococcus sp.. Organism_taxid: 1831.
(2)
2a
1c1xA02
A:137-338
2b
1c1xB02
B:137-338
[
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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