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1C16
Biol. Unit 4
Info
Asym.Unit (243 KB)
Biol.Unit 1 (62 KB)
Biol.Unit 2 (63 KB)
Biol.Unit 3 (62 KB)
Biol.Unit 4 (63 KB)
Biol.Unit 5 (237 KB)
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(1)
Title
:
CRYSTAL STRUCTURE ANALYSIS OF THE GAMMA/DELTA T CELL LIGAND T22
Authors
:
C. Wingren, M. P. Crowley, M. Degano, Y. Chien, I. A. Wilson
Date
:
20 Jul 99 (Deposition) - 26 Jan 00 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.10
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Biol. Unit 4: G,H (1x)
Biol. Unit 5: A,B,C,D,E,F,G,H (1x)
Keywords
:
Non-Classical Mhc-Like, Major Histocompatibility, Beta2- Microglobulin, Immune System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Wingren, M. P. Crowley, M. Degano, Y. Chien, I. A. Wilson
Crystal Structure Of A Gammadelta T Cell Receptor Ligand T22: A Truncated Mhc-Like Fold.
Science V. 287 310 2000
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
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Sorry, no Info available
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_076691 (D76N, chain H, )
View:
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_076691
D
96
N
B2MG_HUMAN
Disease (AMYL8)
398122820
H
D
76
N
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: IG_MHC (H:78-84)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
IG_MHC
PS00290
Immunoglobulins and major histocompatibility complex proteins signature.
B2MG_HUMAN
98-104
1
-
-
-
H:78-84
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(3, 12)
Info
All SCOP Domains
1a: SCOP_d1c16b_ (B:)
1b: SCOP_d1c16d_ (D:)
1c: SCOP_d1c16f_ (F:)
1d: SCOP_d1c16h_ (H:)
2a: SCOP_d1c16a1 (A:181-276)
2b: SCOP_d1c16c1 (C:181-276)
2c: SCOP_d1c16e1 (E:181-276)
2d: SCOP_d1c16g1 (G:181-276)
3a: SCOP_d1c16a2 (A:1-180)
3b: SCOP_d1c16c2 (C:1-180)
3c: SCOP_d1c16e2 (E:1-180)
3d: SCOP_d1c16g2 (G:1-180)
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)
(
)
Folds
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)
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)
(
)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
beta2-microglobulin
(530)
Human (Homo sapiens) [TaxId: 9606]
(350)
1a
d1c16b_
B:
1b
d1c16d_
D:
1c
d1c16f_
F:
1d
d1c16h_
H:
Protein domain
:
Class I MHC homolog, alpha-3 domain
(6)
Mouse (Mus musculus), t22 [TaxId: 10090]
(2)
2a
d1c16a1
A:181-276
2b
d1c16c1
C:181-276
2c
d1c16e1
E:181-276
2d
d1c16g1
G:181-276
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
MHC antigen-recognition domain
(585)
Superfamily
:
MHC antigen-recognition domain
(585)
Family
:
MHC antigen-recognition domain
(533)
Protein domain
:
Class I MHC homolog
(6)
Mouse (Mus musculus), t22 [TaxId: 10090]
(2)
3a
d1c16a2
A:1-180
3b
d1c16c2
C:1-180
3c
d1c16e2
E:1-180
3d
d1c16g2
G:1-180
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CATH Domains
(2, 12)
Info
all CATH domains
1a: CATH_1c16A01 (A:1-179)
1b: CATH_1c16C01 (C:1-179)
1c: CATH_1c16G01 (G:1-179)
1d: CATH_1c16E01 (E:1-179)
2a: CATH_1c16B00 (B:1-99)
2b: CATH_1c16A02 (A:180-276)
2c: CATH_1c16C02 (C:180-276)
2d: CATH_1c16E02 (E:180-276)
2e: CATH_1c16G02 (G:180-276)
2f: CATH_1c16D00 (D:1-99)
2g: CATH_1c16F00 (F:1-99)
2h: CATH_1c16H00 (H:1-99)
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)
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)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1
(402)
Homologous Superfamily
:
Murine Class I Major Histocompatibility Complex, H2-DB, subunit A, domain 1
(400)
House mouse (Mus musculus)
(92)
1a
1c16A01
A:1-179
1b
1c16C01
C:1-179
1c
1c16G01
G:1-179
1d
1c16E01
E:1-179
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
House mouse (Mus musculus)
(616)
2a
1c16B00
B:1-99
2b
1c16A02
A:180-276
2c
1c16C02
C:180-276
2d
1c16E02
E:180-276
2e
1c16G02
G:180-276
2f
1c16D00
D:1-99
2g
1c16F00
F:1-99
2h
1c16H00
H:1-99
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (243 KB)
Header - Asym.Unit
Biol.Unit 1 (62 KB)
Header - Biol.Unit 1
Biol.Unit 2 (63 KB)
Header - Biol.Unit 2
Biol.Unit 3 (62 KB)
Header - Biol.Unit 3
Biol.Unit 4 (63 KB)
Header - Biol.Unit 4
Biol.Unit 5 (237 KB)
Header - Biol.Unit 5
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