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1C16
Asym. Unit
Info
Asym.Unit (243 KB)
Biol.Unit 1 (62 KB)
Biol.Unit 2 (63 KB)
Biol.Unit 3 (62 KB)
Biol.Unit 4 (63 KB)
Biol.Unit 5 (237 KB)
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(1)
Title
:
CRYSTAL STRUCTURE ANALYSIS OF THE GAMMA/DELTA T CELL LIGAND T22
Authors
:
C. Wingren, M. P. Crowley, M. Degano, Y. Chien, I. A. Wilson
Date
:
20 Jul 99 (Deposition) - 26 Jan 00 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.10
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Biol. Unit 4: G,H (1x)
Biol. Unit 5: A,B,C,D,E,F,G,H (1x)
Keywords
:
Non-Classical Mhc-Like, Major Histocompatibility, Beta2- Microglobulin, Immune System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Wingren, M. P. Crowley, M. Degano, Y. Chien, I. A. Wilson
Crystal Structure Of A Gammadelta T Cell Receptor Ligand T22: A Truncated Mhc-Like Fold.
Science V. 287 310 2000
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
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All Sites
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SAPs(SNPs)/Variants
(1, 4)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_076691 (D76N, chain B/D/F/H, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_076691
D
96
N
B2MG_HUMAN
Disease (AMYL8)
398122820
B/D/F/H
D
76
N
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: IG_MHC (B:78-84,D:78-84,F:78-84,H:78-84)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
IG_MHC
PS00290
Immunoglobulins and major histocompatibility complex proteins signature.
B2MG_HUMAN
98-104
4
B:78-84
D:78-84
F:78-84
H:78-84
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 12)
Info
All SCOP Domains
1a: SCOP_d1c16b_ (B:)
1b: SCOP_d1c16d_ (D:)
1c: SCOP_d1c16f_ (F:)
1d: SCOP_d1c16h_ (H:)
2a: SCOP_d1c16a1 (A:181-276)
2b: SCOP_d1c16c1 (C:181-276)
2c: SCOP_d1c16e1 (E:181-276)
2d: SCOP_d1c16g1 (G:181-276)
3a: SCOP_d1c16a2 (A:1-180)
3b: SCOP_d1c16c2 (C:1-180)
3c: SCOP_d1c16e2 (E:1-180)
3d: SCOP_d1c16g2 (G:1-180)
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)
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)
Superfamilies
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
beta2-microglobulin
(530)
Human (Homo sapiens) [TaxId: 9606]
(350)
1a
d1c16b_
B:
1b
d1c16d_
D:
1c
d1c16f_
F:
1d
d1c16h_
H:
Protein domain
:
Class I MHC homolog, alpha-3 domain
(6)
Mouse (Mus musculus), t22 [TaxId: 10090]
(2)
2a
d1c16a1
A:181-276
2b
d1c16c1
C:181-276
2c
d1c16e1
E:181-276
2d
d1c16g1
G:181-276
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
MHC antigen-recognition domain
(585)
Superfamily
:
MHC antigen-recognition domain
(585)
Family
:
MHC antigen-recognition domain
(533)
Protein domain
:
Class I MHC homolog
(6)
Mouse (Mus musculus), t22 [TaxId: 10090]
(2)
3a
d1c16a2
A:1-180
3b
d1c16c2
C:1-180
3c
d1c16e2
E:1-180
3d
d1c16g2
G:1-180
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CATH Domains
(2, 12)
Info
all CATH domains
1a: CATH_1c16A01 (A:1-179)
1b: CATH_1c16C01 (C:1-179)
1c: CATH_1c16G01 (G:1-179)
1d: CATH_1c16E01 (E:1-179)
2a: CATH_1c16B00 (B:1-99)
2b: CATH_1c16A02 (A:180-276)
2c: CATH_1c16C02 (C:180-276)
2d: CATH_1c16E02 (E:180-276)
2e: CATH_1c16G02 (G:180-276)
2f: CATH_1c16D00 (D:1-99)
2g: CATH_1c16F00 (F:1-99)
2h: CATH_1c16H00 (H:1-99)
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)
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)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1
(402)
Homologous Superfamily
:
Murine Class I Major Histocompatibility Complex, H2-DB, subunit A, domain 1
(400)
House mouse (Mus musculus)
(92)
1a
1c16A01
A:1-179
1b
1c16C01
C:1-179
1c
1c16G01
G:1-179
1d
1c16E01
E:1-179
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
House mouse (Mus musculus)
(616)
2a
1c16B00
B:1-99
2b
1c16A02
A:180-276
2c
1c16C02
C:180-276
2d
1c16E02
E:180-276
2e
1c16G02
G:180-276
2f
1c16D00
D:1-99
2g
1c16F00
F:1-99
2h
1c16H00
H:1-99
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (243 KB)
Header - Asym.Unit
Biol.Unit 1 (62 KB)
Header - Biol.Unit 1
Biol.Unit 2 (63 KB)
Header - Biol.Unit 2
Biol.Unit 3 (62 KB)
Header - Biol.Unit 3
Biol.Unit 4 (63 KB)
Header - Biol.Unit 4
Biol.Unit 5 (237 KB)
Header - Biol.Unit 5
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