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1BZO
Asym. Unit
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Asym.Unit (31 KB)
Biol.Unit 1 (51 KB)
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(1)
Title
:
THREE-DIMENSIONAL STRUCTURE OF PROKARYOTIC CU,ZN SUPEROXIDE DISMUTASE FROM P.LEIOGNATHI, SOLVED BY X-RAY CRYSTALLOGRAPHY.
Authors
:
D. Bordo, D. Matak, K. Djinovic-Carugo, C. Rosano, A. Pesce, M. Bolognesi, M. E. Stroppolo, M. Falconi, A. Battistoni, A. Desideri
Date
:
02 Nov 98 (Deposition) - 09 Apr 99 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Monomeric Cu, Zn Superoxide Dismutase, Protein-Subunit Recognition, Protein Electrostatic, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. Bordo, D. Matak, K. Djinovic-Carugo, C. Rosano, A. Pesce, M. Bolognesi, M. E. Stroppolo, M. Falconi, A. Battistoni, A. Desideri
Evolutionary Constraints For Dimer Formation In Prokaryotic Cu, Zn Superoxide Dismutase.
J. Mol. Biol. V. 285 283 1999
(for further references see the
PDB file header
)
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Hetero Components
(3, 4)
Info
All Hetero Components
1a: COPPER (II) ION (CUa)
2a: URANYL (VI) ION (IUMa)
2b: URANYL (VI) ION (IUMb)
3a: ZINC ION (ZNa)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CU
1
Ligand/Ion
COPPER (II) ION
2
IUM
2
Ligand/Ion
URANYL (VI) ION
3
ZN
1
Ligand/Ion
ZINC ION
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: CU (AUTHOR)
6: ZN (AUTHOR)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:61 , HIS A:69 , HIS A:78 , ASP A:81
BINDING SITE FOR RESIDUE ZN A 151
2
AC2
SOFTWARE
HIS A:44 , HIS A:46 , HIS A:61 , HIS A:118
BINDING SITE FOR RESIDUE CU A 152
3
AC3
SOFTWARE
ASP A:76
BINDING SITE FOR RESIDUE IUM A 502
4
AC4
SOFTWARE
GLU A:53B
BINDING SITE FOR RESIDUE IUM A 559
5
CU
AUTHOR
HIS A:44 , HIS A:46 , HIS A:61 , HIS A:118
ACTIVE SITE CU,ZN COORDINATION SPHERE. HIS44, HIS46, HIS61 AND HIS118 ARE COORDINATE TO THE COPPER CATALYTIC ION, WHILE HIS61, HIS69, HIS78 AND ASP81 ARE COORDINATED TO THE ZINC ION
6
ZN
AUTHOR
HIS A:61 , HIS A:69 , HIS A:78 , ASP A:81
ACTIVE SITE CU,ZN COORDINATION SPHERE. HIS44, HIS46, HIS61 AND HIS118 ARE COORDINATE TO THE COPPER CATALYTIC ION, WHILE HIS61, HIS69, HIS78 AND ASP81 ARE COORDINATED TO THE ZINC ION
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: SOD_CU_ZN_1 (A:42-52)
2: SOD_CU_ZN_2 (A:136-147)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SOD_CU_ZN_1
PS00087
Copper/Zinc superoxide dismutase signature 1.
SODC_PHOLE
65-75
1
A:42-52
2
SOD_CU_ZN_2
PS00332
Copper/Zinc superoxide dismutase signature 2.
SODC_PHOLE
161-172
1
A:136-147
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1bzoa_ (A:)
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)
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)
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)
Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Cu,Zn superoxide dismutase-like
(165)
Family
:
Cu,Zn superoxide dismutase-like
(158)
Protein domain
:
Cu,Zn superoxide dismutase, SOD
(134)
Photobacterium leiognathi [TaxId: 553611]
(9)
1a
d1bzoa_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1bzoA00 (A:2-148)
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Organisms
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Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
[code=2.60.40.200, no name defined]
(125)
Photobacterium leiognathi. Organism_taxid: 658.
(1)
1a
1bzoA00
A:2-148
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Asym.Unit (31 KB)
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