PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
1BYE
Asym. Unit
Info
Asym.Unit (148 KB)
Biol.Unit 1 (71 KB)
Biol.Unit 2 (71 KB)
Biol.Unit 3 (276 KB)
Biol.Unit 4 (140 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
GLUTATHIONE S-TRANSFERASE I FROM MAIS IN COMPLEX WITH ATRAZINE GLUTATHIONE CONJUGATE
Authors
:
L. Prade, R. Huber, B. Bieseler
Date
:
14 Oct 98 (Deposition) - 21 Oct 98 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: A,B,C,D (2x)
Biol. Unit 4: A,B,C,D (1x)
Keywords
:
Glutathione S-Transferase, Herbicide
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Prade, R. Huber, B. Bieseler
Structures Of Herbicides In Complex With Their Detoxifying Enzyme Glutathione S-Transferase - Explanations For The Selectivity Of The Enzyme In Plants.
Structure V. 6 1445 1998
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(1, 4)
Info
All Hetero Components
1a: ATRAZINE GLUTATHIONE CONJUGATE (ATAa)
1b: ATRAZINE GLUTATHIONE CONJUGATE (ATAb)
1c: ATRAZINE GLUTATHIONE CONJUGATE (ATAc)
1d: ATRAZINE GLUTATHIONE CONJUGATE (ATAd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ATA
4
Ligand/Ion
ATRAZINE GLUTATHIONE CONJUGATE
[
close Hetero Component info
]
Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
MET A:10 , SER A:11 , TRP A:12 , ASN A:13 , ASN A:34 , PHE A:35 , ALA A:36 , HIS A:40 , GLY A:52 , GLN A:53 , VAL A:54 , PRO A:55 , GLU A:66 , SER A:67 , ILE A:118 , MET A:121 , HOH A:1002
BINDING SITE FOR RESIDUE ATA A 1001
2
AC2
SOFTWARE
HOH A:1005 , MET B:10 , SER B:11 , ASN B:13 , PHE B:35 , LYS B:41 , GLY B:52 , GLN B:53 , VAL B:54 , GLU B:66 , SER B:67 , ILE B:118 , MET D:121 , LEU D:122 , GLY D:123
BINDING SITE FOR RESIDUE ATA B 1002
3
AC3
SOFTWARE
SER C:11 , ASN C:13 , PHE C:35 , GLN C:53 , VAL C:54 , PRO C:55 , GLU C:66 , SER C:67 , ILE C:118 , HOH C:1017
BINDING SITE FOR RESIDUE ATA C 1003
4
AC4
SOFTWARE
MET B:121 , LEU B:122 , ASN C:103 , MET D:10 , SER D:11 , ASN D:13 , PHE D:35 , HIS D:40 , LYS D:41 , GLN D:53 , VAL D:54 , PRO D:55 , GLU D:66 , SER D:67 , ILE D:118 , HOH D:1006
BINDING SITE FOR RESIDUE ATA D 1004
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 8)
Info
All PROSITE Patterns/Profiles
1: GST_NTER (A:1-82,B:1-82,C:1-82,D:1-82)
2: GST_CTER (A:87-213,B:87-213,C:87-213,D:87-21...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GST_NTER
PS50404
Soluble glutathione S-transferase N-terminal domain profile.
GSTF1_MAIZE
2-83
4
A:1-82
B:1-82
C:1-82
D:1-82
2
GST_CTER
PS50405
Soluble glutathione S-transferase C-terminal domain profile.
GSTF1_MAIZE
88-214
4
A:87-213
B:87-213
C:87-213
D:87-213
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d1byea1 (A:81-213)
1b: SCOP_d1byeb1 (B:81-213)
1c: SCOP_d1byec1 (C:81-213)
1d: SCOP_d1byed1 (D:81-213)
2a: SCOP_d1byea2 (A:1-80)
2b: SCOP_d1byeb2 (B:1-80)
2c: SCOP_d1byec2 (C:1-80)
2d: SCOP_d1byed2 (D:1-80)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
GST C-terminal domain-like
(353)
Superfamily
:
GST C-terminal domain-like
(353)
Family
:
Glutathione S-transferase (GST), C-terminal domain
(263)
Protein domain
:
Class phi GST
(5)
Maize (Zea mays), type I [TaxId: 4577]
(2)
1a
d1byea1
A:81-213
1b
d1byeb1
B:81-213
1c
d1byec1
C:81-213
1d
d1byed1
D:81-213
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Thioredoxin fold
(994)
Superfamily
:
Thioredoxin-like
(992)
Family
:
Glutathione S-transferase (GST), N-terminal domain
(216)
Protein domain
:
Class phi GST
(5)
Maize (Zea mays), type I [TaxId: 4577]
(2)
2a
d1byea2
A:1-80
2b
d1byeb2
B:1-80
2c
d1byec2
C:1-80
2d
d1byed2
D:1-80
[
close SCOP info
]
CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_1byeA01 (A:2-83)
1b: CATH_1byeB01 (B:2-83)
1c: CATH_1byeC01 (C:2-83)
1d: CATH_1byeD01 (D:2-83)
2a: CATH_1byeA02 (A:84-206)
2b: CATH_1byeB02 (B:84-206)
2c: CATH_1byeC02 (C:84-206)
2d: CATH_1byeD02 (D:84-206)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Glutaredoxin
(620)
Homologous Superfamily
:
Glutaredoxin
(617)
Zea mays. Organism_taxid: 4577.
(1)
1a
1byeA01
A:2-83
1b
1byeB01
B:2-83
1c
1byeC01
C:2-83
1d
1byeD01
D:2-83
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2
(267)
Homologous Superfamily
:
[code=1.20.1050.10, no name defined]
(249)
Zea mays. Organism_taxid: 4577.
(1)
2a
1byeA02
A:84-206
2b
1byeB02
B:84-206
2c
1byeC02
C:84-206
2d
1byeD02
D:84-206
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (148 KB)
Header - Asym.Unit
Biol.Unit 1 (71 KB)
Header - Biol.Unit 1
Biol.Unit 2 (71 KB)
Header - Biol.Unit 2
Biol.Unit 3 (276 KB)
Header - Biol.Unit 3
Biol.Unit 4 (140 KB)
Header - Biol.Unit 4
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
1BYE
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
