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1BXG
Asym. Unit
Info
Asym.Unit (114 KB)
Biol.Unit 1 (109 KB)
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(1)
Title
:
PHENYLALANINE DEHYDROGENASE STRUCTURE IN TERNARY COMPLEX WITH NAD+ AND BETA-PHENYLPROPIONATE
Authors
:
J. L. Vanhooke, J. B. Thoden, N. M. W. Brunhuber, J. L. Blanchard, H. M. Holden
Date
:
02 Oct 98 (Deposition) - 18 May 99 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Amino Acid Dehydrogenase, Oxidative Deamination Mechanism
(Keyword Search:
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Reference
:
J. L. Vanhooke, J. B. Thoden, N. M. Brunhuber, J. S. Blanchard, H. M. Holden
Phenylalanine Dehydrogenase From Rhodococcus Sp. M4: High-Resolution X-Ray Analyses Of Inhibitory Ternary Complexes Reveal Key Features In The Oxidative Deamination Mechanism.
Biochemistry V. 38 2326 1999
(for further references see the
PDB file header
)
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Hetero Components
(4, 6)
Info
All Hetero Components
1a: HYDROCINNAMIC ACID (HCIa)
1b: HYDROCINNAMIC ACID (HCIb)
2a: POTASSIUM ION (Ka)
3a: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADa)
3b: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADb)
4a: PHOSPHATE ION (PO4a)
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No.
Name
Count
Type
Full Name
1
HCI
2
Ligand/Ion
HYDROCINNAMIC ACID
2
K
1
Ligand/Ion
POTASSIUM ION
3
NAD
2
Ligand/Ion
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
4
PO4
1
Ligand/Ion
PHOSPHATE ION
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HOH B:111 , HOH B:151 , LEU B:570 , SER B:572 , ASP B:574 , LEU B:576 , PO4 B:900
BINDING SITE FOR RESIDUE K B 850
2
AC2
SOFTWARE
SER B:401 , SER B:404 , LYS B:458 , LEU B:570 , K B:850
BINDING SITE FOR RESIDUE PO4 B 900
3
AC3
SOFTWARE
SER A:149 , THR A:153 , GLY A:182 , GLY A:184 , ALA A:185 , VAL A:186 , ASP A:205 , THR A:206 , CYS A:238 , ALA A:239 , MET A:240 , ALA A:260 , ALA A:261 , ASN A:288 , HCI A:361 , HOH A:401 , HOH A:426
BINDING SITE FOR RESIDUE NAD A 360
4
AC4
SOFTWARE
GLY A:39 , GLY A:40 , LYS A:66 , LYS A:78 , GLY A:116 , ASN A:262 , NAD A:360
BINDING SITE FOR RESIDUE HCI A 361
5
AC5
SOFTWARE
HOH B:4 , HOH B:36 , ARG B:442 , SER B:549 , THR B:553 , GLY B:582 , LEU B:583 , GLY B:584 , ALA B:585 , VAL B:586 , ALA B:604 , ASP B:605 , THR B:606 , ARG B:610 , LEU B:624 , CYS B:638 , ALA B:639 , ALA B:660 , ALA B:661 , ASN B:662 , ASN B:688 , HCI B:761
BINDING SITE FOR RESIDUE NAD B 760
6
AC6
SOFTWARE
HOH B:27 , HOH B:36 , GLY B:439 , GLY B:440 , LYS B:466 , LYS B:478 , GLY B:516 , ASN B:662 , NAD B:760
BINDING SITE FOR RESIDUE HCI B 761
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1bxga2 (A:1-148)
1b: SCOP_d1bxgb2 (B:401-548)
2a: SCOP_d1bxga1 (A:149-349)
2b: SCOP_d1bxgb1 (B:549-747)
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Protein Domains
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(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Aminoacid dehydrogenase-like, N-terminal domain
(100)
Superfamily
:
Aminoacid dehydrogenase-like, N-terminal domain
(100)
Family
:
Aminoacid dehydrogenases
(28)
Protein domain
:
Phenylalanine dehydrogenase
(4)
Rhodococcus sp., M4 [TaxId: 1831]
(4)
1a
d1bxga2
A:1-148
1b
d1bxgb2
B:401-548
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
Aminoacid dehydrogenase-like, C-terminal domain
(67)
Protein domain
:
Phenylalanine dehydrogenase
(4)
Rhodococcus sp., M4 [TaxId: 1831]
(4)
2a
d1bxga1
A:149-349
2b
d1bxgb1
B:549-747
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1bxgA01 (A:3-64,A:75-136,A:339-349)
1b: CATH_1bxgB01 (B:405-464,B:475-536,B:739-747)
2a: CATH_1bxgA02 (A:137-338)
2b: CATH_1bxgB02 (B:537-738)
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Organisms
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)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Leucine Dehydrogenase; Chain A, domain 1
(52)
Homologous Superfamily
:
Leucine Dehydrogenase, chain A, domain 1
(52)
Rhodococcus sp.. Organism_taxid: 1831. Cell_line: bl21.
(2)
1a
1bxgA01
A:3-64,A:75-136,A:339-349
1b
1bxgB01
B:405-464,B:475-536,B:739-747
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
Rhodococcus sp.. Organism_taxid: 1831. Cell_line: bl21.
(2)
2a
1bxgA02
A:137-338
2b
1bxgB02
B:537-738
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (114 KB)
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