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1BX4
Asym. Unit
Info
Asym.Unit (69 KB)
Biol.Unit 1 (63 KB)
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(1)
Title
:
STRUCTURE OF HUMAN ADENOSINE KINASE AT 1.50 ANGSTROMS
Authors
:
I. I. Mathews, M. D. Erion, S. E. Ealick
Date
:
13 Oct 98 (Deposition) - 13 Oct 99 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.50
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Human Adenosine Kinase, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
I. I. Mathews, M. D. Erion, S. E. Ealick
Structure Of Human Adenosine Kinase At 1. 5 A Resolution.
Biochemistry V. 37 15607 1998
(for further references see the
PDB file header
)
[
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]
Hetero Components
(3, 7)
Info
All Hetero Components
1a: ADENOSINE (ADNa)
1b: ADENOSINE (ADNb)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
3c: MAGNESIUM ION (MGc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ADN
2
Ligand/Ion
ADENOSINE
2
CL
2
Ligand/Ion
CHLORIDE ION
3
MG
3
Ligand/Ion
MAGNESIUM ION
[
close Hetero Component info
]
Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: ADA (AUTHOR)
9: ADB (AUTHOR)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASN A:14 , THR A:66 , ADN A:350
BINDING SITE FOR RESIDUE CL A 380
2
AC2
SOFTWARE
THR A:265 , HOH A:556 , HOH A:746
BINDING SITE FOR RESIDUE CL A 385
3
AC3
SOFTWARE
HOH A:746 , HOH A:747 , HOH A:748 , HOH A:749 , HOH A:750 , HOH A:751
BINDING SITE FOR RESIDUE MG A 360
4
AC4
SOFTWARE
ASP A:130 , ASN A:131 , HOH A:752 , HOH A:753 , HOH A:754 , HOH A:755
BINDING SITE FOR RESIDUE MG A 365
5
AC5
SOFTWARE
SER A:32 , HOH A:402 , HOH A:756 , HOH A:757 , HOH A:758 , HOH A:759
BINDING SITE FOR RESIDUE MG A 375
6
AC6
SOFTWARE
ASN A:14 , ASP A:18 , LEU A:40 , GLY A:64 , SER A:65 , ASN A:68 , PHE A:170 , ASN A:296 , GLY A:297 , ASP A:300 , CL A:380 , HOH A:415 , HOH A:416 , HOH A:430
BINDING SITE FOR RESIDUE ADN A 350
7
AC7
SOFTWARE
THR A:265 , GLY A:267 , ARG A:268 , THR A:271 , ASP A:286 , GLN A:289 , ILE A:292 , ALA A:298 , GLY A:299 , HIS A:324 , ALA A:327 , ILE A:331 , HOH A:408 , HOH A:410 , HOH A:420 , HOH A:425 , HOH A:577 , HOH A:597 , HOH A:637
BINDING SITE FOR RESIDUE ADN A 355
8
ADA
AUTHOR
ADN A:350
ADN 350 BINDS IN THE SUBSTRATE BINDING SITE.
9
ADB
AUTHOR
ADN A:355
ADN 355 BINDS IN THE ATP BINDING SITE.
[
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]
SAPs(SNPs)/Variants
(3, 3)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_066640 (G13E, chain A, )
2: VAR_066641 (D218A, chain A, )
3: VAR_066642 (A301E, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_066640
G
30
E
ADK_HUMAN
Disease (HMAKD)
---
A
G
13
E
2
UniProt
VAR_066641
D
235
A
ADK_HUMAN
Disease (HMAKD)
---
A
D
218
A
3
UniProt
VAR_066642
A
318
E
ADK_HUMAN
Disease (HMAKD)
---
A
A
301
E
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: PFKB_KINASES_2 (A:294-307)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PFKB_KINASES_2
PS00584
pfkB family of carbohydrate kinases signature 2.
ADK_HUMAN
311-324
1
A:294-307
[
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Exons
(11, 11)
Info
All Exons
Exon 1.1a (A:4-5)
Exon 1.4 (A:5-30)
Exon 1.5 (A:30-48)
Exon 1.6 (A:48-74)
Exon 1.7 (A:75-132)
Exon 1.8 (A:132-168)
Exon 1.9a (A:169-225)
Exon 1.11 (A:226-237)
Exon 1.12 (A:238-276)
Exon 1.13 (A:276-305)
Exon 1.14a (A:305-345)
View:
Select:
Label:
All Exon Boundaries
01: Boundary -/1.1a
02: Boundary 1.1a/1.4
03: Boundary 1.4/1.5
04: Boundary 1.5/1.6
05: Boundary 1.6/1.7
06: Boundary 1.7/1.8
07: Boundary 1.8/1.9a
08: Boundary 1.9a/1.11
09: Boundary 1.11/1.12
10: Boundary 1.12/1.13
11: Boundary 1.13/1.14a
12: Boundary 1.14a/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000286621
1a
ENSE00001248887
chr10:
75910987-75911101
115
ADK_HUMAN
1-22
22
1
A:4-5
2
1.4
ENST00000286621
4
ENSE00001248864
chr10:
75960522-75960596
75
ADK_HUMAN
22-47
26
1
A:5-30
26
1.5
ENST00000286621
5
ENSE00001248860
chr10:
75984296-75984349
54
ADK_HUMAN
47-65
19
1
A:30-48
19
1.6
ENST00000286621
6
ENSE00001178540
chr10:
76074425-76074503
79
ADK_HUMAN
65-91
27
1
A:48-74
27
1.7
ENST00000286621
7
ENSE00001024568
chr10:
76153899-76154071
173
ADK_HUMAN
92-149
58
1
A:75-132
58
1.8
ENST00000286621
8
ENSE00001024570
chr10:
76158229-76158337
109
ADK_HUMAN
149-185
37
1
A:132-168
37
1.9a
ENST00000286621
9a
ENSE00001310865
chr10:
76285014-76285184
171
ADK_HUMAN
186-242
57
1
A:169-225
57
1.11
ENST00000286621
11
ENSE00001248835
chr10:
76349040-76349075
36
ADK_HUMAN
243-254
12
1
A:226-237
12
1.12
ENST00000286621
12
ENSE00001248829
chr10:
76360137-76360251
115
ADK_HUMAN
255-293
39
1
A:238-276
39
1.13
ENST00000286621
13
ENSE00001248825
chr10:
76429941-76430027
87
ADK_HUMAN
293-322
30
1
A:276-305
30
1.14a
ENST00000286621
14a
ENSE00001879300
chr10:
76468079-76468233
155
ADK_HUMAN
322-362
41
1
A:305-345
41
[
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]
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1bx4a_ (A:)
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(
)
Folds
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(
)
Superfamilies
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(
)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Ribokinase-like
(226)
Superfamily
:
Ribokinase-like
(189)
Family
:
Ribokinase-like
(36)
Protein domain
:
Adenosine kinase
(13)
Human (Homo sapiens) [TaxId: 9606]
(3)
1a
d1bx4a_
A:
[
close SCOP info
]
CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_1bx4A02 (A:17-62,A:121-137)
2a: CATH_1bx4A01 (A:4-16,A:63-120,A:138-345)
View:
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Architectures
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(
)
Topologies
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)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Adenosine kinase, small domain
(17)
Homologous Superfamily
:
[code=3.30.1110.10, no name defined]
(12)
Human (Homo sapiens)
(2)
1a
1bx4A02
A:17-62,A:121-137
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase
(109)
Homologous Superfamily
:
[code=3.40.1190.20, no name defined]
(73)
Human (Homo sapiens)
(10)
2a
1bx4A01
A:4-16,A:63-120,A:138-345
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
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Atom Selection
(currently selected atoms:
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Protein
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Chain A
Asymmetric Unit 1
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