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1BVZ
Asym. Unit
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Asym.Unit (208 KB)
Biol.Unit 1 (104 KB)
Biol.Unit 2 (103 KB)
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(1)
Title
:
ALPHA-AMYLASE II (TVAII) FROM THERMOACTINOMYCES VULGARIS R-47
Authors
:
S. Kamitori, S. Kondo, K. Okuyama, T. Yokota, Y. Shimura, T. Tonozuka, Y. Sakano
Date
:
22 Sep 98 (Deposition) - 02 Mar 99 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Hydrolase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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)
Reference
:
S. Kamitori, S. Kondo, K. Okuyama, T. Yokota, Y. Shimura, T. Tonozuka, Y. Sakano
Crystal Structure Of Thermoactinomyces Vulgaris R-47 Alpha-Amylase Ii (Tvaii) Hydrolyzing Cyclodextrins And Pullulan At 2. 6 A Resolution.
J. Mol. Biol. V. 287 907 1999
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 6)
Info
All SCOP Domains
1a: SCOP_d1bvza2 (A:503-585)
1b: SCOP_d1bvzb2 (B:503-585)
2a: SCOP_d1bvza1 (A:1-120)
2b: SCOP_d1bvzb1 (B:1-120)
3a: SCOP_d1bvza3 (A:121-502)
3b: SCOP_d1bvzb3 (B:121-502)
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Protein Domains
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Organisms
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Class
:
All beta proteins
(24004)
Fold
:
Glycosyl hydrolase domain
(397)
Superfamily
:
Glycosyl hydrolase domain
(397)
Family
:
alpha-Amylases, C-terminal beta-sheet domain
(272)
Protein domain
:
Maltogenic amylase
(22)
Thermoactinomyces vulgaris, TVAII [TaxId: 2026]
(11)
1a
d1bvza2
A:503-585
1b
d1bvzb2
B:503-585
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
E set domains
(509)
Family
:
E-set domains of sugar-utilizing enzymes
(147)
Protein domain
:
Maltogenic amylase, N-terminal domain N
(22)
Thermoactinomyces vulgaris, TVAII [TaxId: 2026]
(11)
2a
d1bvza1
A:1-120
2b
d1bvzb1
B:1-120
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
(Trans)glycosidases
(1191)
Family
:
Amylase, catalytic domain
(385)
Protein domain
:
Maltogenic amylase, central domain
(22)
Thermoactinomyces vulgaris, TVAII [TaxId: 2026]
(11)
3a
d1bvza3
A:121-502
3b
d1bvzb3
B:121-502
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CATH Domains
(3, 6)
Info
all CATH domains
1a: CATH_1bvzA02 (A:122-242,A:298-502)
1b: CATH_1bvzB02 (B:122-242,B:298-502)
2a: CATH_1bvzA04 (A:503-585)
2b: CATH_1bvzB04 (B:503-585)
3a: CATH_1bvzA01 (A:1-121)
3b: CATH_1bvzB01 (B:1-121)
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Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Glycosidases
(843)
Thermoactinomyces vulgaris. Organism_taxid: 2026.
(2)
1a
1bvzA02
A:122-242,A:298-502
1b
1bvzB02
B:122-242,B:298-502
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Golgi alpha-mannosidase II
(346)
Thermoactinomyces vulgaris. Organism_taxid: 2026.
(2)
2a
1bvzA04
A:503-585
2b
1bvzB04
B:503-585
Homologous Superfamily
:
Immunoglobulins
(2282)
Thermoactinomyces vulgaris. Organism_taxid: 2026.
(2)
3a
1bvzA01
A:1-121
3b
1bvzB01
B:1-121
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Pfam Domains
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Show PDB file:
Asym.Unit (208 KB)
Header - Asym.Unit
Biol.Unit 1 (104 KB)
Header - Biol.Unit 1
Biol.Unit 2 (103 KB)
Header - Biol.Unit 2
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