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1BUY
Asym. Unit
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Asym.Unit (54 KB)
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(1)
Title
:
HUMAN ERYTHROPOIETIN, NMR MINIMIZED AVERAGE STRUCTURE
Authors
:
J. C. Cheetham, D. M. Smith, K. H. Aoki, J. L. Stevenson, T. J. Hoeffel, R. S. Syed, J. Egrie, T. S. Harvey
Date
:
08 Sep 98 (Deposition) - 10 Sep 99 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A
Keywords
:
Cytokine, Glycoprotein, Growth Factor
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. C. Cheetham, D. M. Smith, K. H. Aoki, J. L. Stevenson, T. J. Hoeffel, R. S. Syed, J. Egrie, T. S. Harvey
Nmr Structure Of Human Erythropoietin And A Comparison With Its Receptor Bound Conformation.
Nat. Struct. Biol. V. 5 861 1998
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Sorry, no Info available
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_009871 (P122Q, chain A, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_009871
P
149
Q
EPO_HUMAN
Unclassified
---
A
P
122
Q
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: EPO_TPO (A:2-29)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
EPO_TPO
PS00817
Erythropoietin / thrombopoeitin signature.
EPO_HUMAN
29-56
1
A:2-29
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Exons
(4, 4)
Info
All Exons
Exon 1.2 (A:1-26)
Exon 1.3 (A:27-55)
Exon 1.4 (A:56-115)
Exon 1.5 (A:116-166)
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All Exon Boundaries
1: Boundary 1.1/1.2
2: Boundary 1.2/1.3
3: Boundary 1.3/1.4
4: Boundary 1.4/1.5
5: Boundary 1.5/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000252723
1
ENSE00001130431
chr7:
100318423-100318616
194
EPO_HUMAN
1-5
5
0
-
-
1.2
ENST00000252723
2
ENSE00001144077
chr7:
100319181-100319326
146
EPO_HUMAN
5-53
49
1
A:1-26
26
1.3
ENST00000252723
3
ENSE00001130423
chr7:
100319585-100319671
87
EPO_HUMAN
54-82
29
1
A:27-55
29
1.4
ENST00000252723
4
ENSE00001130416
chr7:
100320287-100320466
180
EPO_HUMAN
83-142
60
1
A:56-115
60
1.5
ENST00000252723
5
ENSE00000894545
chr7:
100320601-100321323
723
EPO_HUMAN
143-193
51
1
A:116-166
51
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1buya_ (A:)
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)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
4-helical cytokines
(168)
Superfamily
:
4-helical cytokines
(168)
Family
:
Short-chain cytokines
(78)
Protein domain
:
Erythropoietin
(3)
Human (Homo sapiens) [TaxId: 9606]
(3)
1a
d1buya_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1buyA00 (A:1-166)
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Organisms
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Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Growth Hormone; Chain: A;
(136)
Homologous Superfamily
:
[code=1.20.1250.10, no name defined]
(130)
Human (Homo sapiens)
(110)
1a
1buyA00
A:1-166
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Pfam Domains
(0, 0)
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Chain A
Asymmetric Unit 1
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