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1BU7
Asym. Unit
Info
Asym.Unit (178 KB)
Biol.Unit 1 (88 KB)
Biol.Unit 2 (89 KB)
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(1)
Title
:
CRYOGENIC STRUCTURE OF CYTOCHROME P450BM-3 HEME DOMAIN
Authors
:
H. Li, T. L. Poulos
Date
:
14 Sep 98 (Deposition) - 23 Sep 98 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.65
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Fatty Acid Monooxygenase, Hemoprotein, P450, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
I. F. Sevrioukova, H. Li, H. Zhang, J. A. Peterson, T. L. Poulos
Structure Of A Cytochrome P450-Redox Partner Electron-Transfer Complex.
Proc. Natl. Acad. Sci. Usa V. 96 1863 1999
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(2, 16)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
1g: 1,2-ETHANEDIOL (EDOg)
1h: 1,2-ETHANEDIOL (EDOh)
1i: 1,2-ETHANEDIOL (EDOi)
1j: 1,2-ETHANEDIOL (EDOj)
1k: 1,2-ETHANEDIOL (EDOk)
1l: 1,2-ETHANEDIOL (EDOl)
1m: 1,2-ETHANEDIOL (EDOm)
1n: 1,2-ETHANEDIOL (EDOn)
2a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
2b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
14
Ligand/Ion
1,2-ETHANEDIOL
2
HEM
2
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
[
close Hetero Component info
]
Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LYS A:69 , LEU A:86 , PHE A:87 , TRP A:96 , GLY A:265 , THR A:268 , THR A:269 , PHE A:331 , PRO A:392 , PHE A:393 , GLY A:394 , ARG A:398 , ALA A:399 , CYS A:400 , ILE A:401 , GLY A:402 , ALA A:406 , HOH A:1020 , HOH A:1039 , HOH A:1058 , HOH A:1087 , HOH A:1093 , HOH A:1173 , HOH A:1197
BINDING SITE FOR RESIDUE HEM A 999
02
AC2
SOFTWARE
LYS B:69 , LEU B:86 , TRP B:96 , ALA B:264 , GLY B:265 , THR B:268 , THR B:269 , THR B:327 , PHE B:331 , PRO B:392 , PHE B:393 , GLY B:394 , ARG B:398 , ALA B:399 , CYS B:400 , ILE B:401 , GLY B:402 , ALA B:406 , HOH B:1023 , HOH B:1055 , HOH B:1105 , HOH B:1144 , HOH B:1151 , HOH B:1152 , HOH B:1380
BINDING SITE FOR RESIDUE HEM B 1000
03
AC3
SOFTWARE
HIS A:100 , GLY A:396 , GLN A:397 , ALA A:399 , ILE A:401 , HOH A:1093 , HOH A:1399
BINDING SITE FOR RESIDUE EDO A 1001
04
AC4
SOFTWARE
GLU A:137 , LYS A:447 , ALA A:448 , EDO A:1003
BINDING SITE FOR RESIDUE EDO A 1002
05
AC5
SOFTWARE
TRP A:130 , LEU A:133 , ALA A:448 , EDO A:1002
BINDING SITE FOR RESIDUE EDO A 1003
06
AC6
SOFTWARE
HIS B:100 , GLN B:397 , ALA B:399 , ILE B:401 , HOH B:1015 , HOH B:1151
BINDING SITE FOR RESIDUE EDO B 1004
07
AC7
SOFTWARE
TRP B:130 , LEU B:133 , ALA B:448 , EDO B:1006 , HOH B:1061
BINDING SITE FOR RESIDUE EDO B 1005
08
AC8
SOFTWARE
ASN B:134 , GLU B:137 , ALA B:448 , EDO B:1005 , HOH B:1321
BINDING SITE FOR RESIDUE EDO B 1006
09
AC9
SOFTWARE
THR B:245 , GLY B:246 , GLU B:247 , VAL B:281 , ASP B:425 , ASN B:428 , HOH B:1171 , HOH B:1358 , HOH B:1392
BINDING SITE FOR RESIDUE EDO B 1007
10
BC1
SOFTWARE
LYS A:289 , GLU A:292 , GLU A:293 , ARG A:296
BINDING SITE FOR RESIDUE EDO A 1008
11
BC2
SOFTWARE
ARG B:47 , SER B:72 , GLN B:73
BINDING SITE FOR RESIDUE EDO B 1009
12
BC3
SOFTWARE
PRO B:25 , TYR B:51
BINDING SITE FOR RESIDUE EDO B 1010
13
BC4
SOFTWARE
GLN B:27 , LYS B:31 , HOH B:1227
BINDING SITE FOR RESIDUE EDO B 1011
14
BC5
SOFTWARE
LEU B:181 , ILE B:263 , ALA B:264 , HIS B:266 , LEU B:437 , HOH B:1237 , HOH B:1429
BINDING SITE FOR RESIDUE EDO B 1012
15
BC6
SOFTWARE
VAL A:26 , PRO A:329 , GLU A:435 , THR A:436 , LEU A:437 , HOH A:1262 , HOH A:1414
BINDING SITE FOR RESIDUE EDO A 1013
16
BC7
SOFTWARE
TRP A:90 , HIS A:92 , TYR A:334
BINDING SITE FOR RESIDUE EDO A 1014
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: CYTOCHROME_P450 (A:393-402,B:393-402)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CYTOCHROME_P450
PS00086
Cytochrome P450 cysteine heme-iron ligand signature.
CPXB_BACMB
394-403
2
A:393-402
B:393-402
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1bu7a_ (A:)
1b: SCOP_d1bu7b_ (B:)
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(
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Cytochrome P450
(480)
Superfamily
:
Cytochrome P450
(480)
Family
:
Cytochrome P450
(323)
Protein domain
:
Cytochrome P450 bm-3
(60)
Bacillus megaterium [TaxId: 1404]
(60)
1a
d1bu7a_
A:
1b
d1bu7b_
B:
[
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1bu7A00 (A:1-455)
1b: CATH_1bu7B00 (B:1-455)
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Homologous Superfamilies
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)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Cytochrome p450
(271)
Homologous Superfamily
:
Cytochrome p450
(271)
Bacillus megaterium. Organism_taxid: 1404.
(9)
1a
1bu7A00
A:1-455
1b
1bu7B00
B:1-455
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Atom Selection
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Asymmetric Unit 1
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select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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Asym.Unit (178 KB)
Header - Asym.Unit
Biol.Unit 1 (88 KB)
Header - Biol.Unit 1
Biol.Unit 2 (89 KB)
Header - Biol.Unit 2
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