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1BTK
Asym. Unit
Info
Asym.Unit (65 KB)
Biol.Unit 1 (60 KB)
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(1)
Title
:
PH DOMAIN AND BTK MOTIF FROM BRUTON'S TYROSINE KINASE MUTANT R28C
Authors
:
M. Hyvonen, M. Saraste
Date
:
01 Jul 97 (Deposition) - 17 Sep 97 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.60
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Transferase, Ph Domain, Btk Motif, Zinc Binding, X-Linked Agammaglobulinemia, Tyrosine-Protein Kinase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Hyvonen, M. Saraste
Structure Of The Ph Domain And Btk Motif From Bruton'S Tyrosine Kinase: Molecular Explanations For X-Linked Agammaglobulinaemia.
Embo J. V. 16 3396 1997
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(2, 4)
Info
All Hetero Components
1a: SODIUM ION (NAa)
1b: SODIUM ION (NAb)
2a: ZINC ION (ZNa)
2b: ZINC ION (ZNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
NA
2
Ligand/Ion
SODIUM ION
2
ZN
2
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: ZN1 (UNKNOWN)
6: ZN2 (UNKNOWN)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:143 , CYS A:154 , CYS A:155 , CYS A:165
BINDING SITE FOR RESIDUE ZN A 1
2
AC2
SOFTWARE
HIS B:143 , CYS B:154 , CYS B:155 , CYS B:165
BINDING SITE FOR RESIDUE ZN B 180
3
AC3
SOFTWARE
HOH A:244 , HOH A:262 , HOH A:267 , GLU B:96 , HOH B:212 , HOH B:252
BINDING SITE FOR RESIDUE NA B 181
4
AC4
SOFTWARE
GLU A:96 , HOH A:209 , HOH B:222 , HOH B:232 , HOH B:251
BINDING SITE FOR RESIDUE NA A 171
5
ZN1
UNKNOWN
ZN A:1 , HIS A:143 , CYS A:154 , CYS A:155 , CYS A:165
ZN BINDING SITE IN THE BTK MOTIF, CHAIN A.
6
ZN2
UNKNOWN
ZN B:180 , HIS B:143 , CYS B:154 , CYS B:155 , CYS B:165
ZN BINDING SITE IN THE BTK MOTIF, CHAIN B.
[
close Site info
]
SAPs(SNPs)/Variants
(24, 47)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_006216 (L11P, chain A/B, )
02: VAR_006217 (K12R, chain A/B, )
03: VAR_006218 (S14F, chain A/B, )
04: VAR_008291 (K19E, chain A/B, )
05: VAR_006219 (F25S, chain A/B, )
06: VAR_008292 (K27R, chain A/B, )
07: VAR_008293 (C28C, chain A/B, )
08: VAR_006220 (C28H, chain A/B, )
09: VAR_006221 (C28P, chain A/B, )
10: VAR_006222 (T33P, chain A/B, )
11: VAR_008960 (Y39S, chain A/B, )
12: VAR_008294 (Y40C, chain A/B, )
13: VAR_008295 (Y40N, chain A/B, )
14: VAR_008296 (I61N, chain A/B, )
15: VAR_008297 (V64D, chain A/B, )
16: VAR_006223 (V64F, chain A/B, )
17: VAR_041676 (R82K, chain B, )
18: VAR_006225 (V113D, chain A/B, )
19: VAR_008298 (S115F, chain A/B, )
20: VAR_008299 (T117P, chain A/B, )
21: VAR_008300 (Q127H, chain A/B, )
22: VAR_008301 (C154S, chain A/B, )
23: VAR_008302 (C155G, chain A/B, )
24: VAR_008303 (C155R, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_006216
L
11
P
BTK_HUMAN
Disease (XLA)
---
A/B
L
11
P
02
UniProt
VAR_006217
K
12
R
BTK_HUMAN
Disease (XLA)
---
A/B
K
12
R
03
UniProt
VAR_006218
S
14
F
BTK_HUMAN
Disease (XLA)
---
A/B
S
14
F
04
UniProt
VAR_008291
K
19
E
BTK_HUMAN
Disease (XLA)
---
A/B
K
19
E
05
UniProt
VAR_006219
F
25
S
BTK_HUMAN
Disease (XLA)
---
A/B
F
25
S
06
UniProt
VAR_008292
K
27
R
BTK_HUMAN
Disease (XLA)
---
A/B
K
27
R
07
UniProt
VAR_008293
R
28
C
BTK_HUMAN
Disease (XLA)
---
A/B
C
28
C
08
UniProt
VAR_006220
R
28
H
BTK_HUMAN
Disease (XLA)
---
A/B
C
28
H
09
UniProt
VAR_006221
R
28
P
BTK_HUMAN
Disease (XLA)
---
A/B
C
28
P
10
UniProt
VAR_006222
T
33
P
BTK_HUMAN
Disease (XLA)
---
A/B
T
33
P
11
UniProt
VAR_008960
Y
39
S
BTK_HUMAN
Disease (XLA)
---
A/B
Y
39
S
12
UniProt
VAR_008294
Y
40
C
BTK_HUMAN
Disease (XLA)
---
A/B
Y
40
C
13
UniProt
VAR_008295
Y
40
N
BTK_HUMAN
Disease (XLA)
---
A/B
Y
40
N
14
UniProt
VAR_008296
I
61
N
BTK_HUMAN
Disease (XLA)
---
A/B
I
61
N
15
UniProt
VAR_008297
V
64
D
BTK_HUMAN
Disease (XLA)
---
A/B
V
64
D
16
UniProt
VAR_006223
V
64
F
BTK_HUMAN
Disease (XLA)
---
A/B
V
64
F
17
UniProt
VAR_041676
R
82
K
BTK_HUMAN
Polymorphism
56035945
B
R
82
K
18
UniProt
VAR_006225
V
113
D
BTK_HUMAN
Disease (XLA)
---
A/B
V
113
D
19
UniProt
VAR_008298
S
115
F
BTK_HUMAN
Disease (XLA)
---
A/B
S
115
F
20
UniProt
VAR_008299
T
117
P
BTK_HUMAN
Disease (XLA)
---
A/B
T
117
P
21
UniProt
VAR_008300
Q
127
H
BTK_HUMAN
Disease (XLA)
---
A/B
Q
127
H
22
UniProt
VAR_008301
C
154
S
BTK_HUMAN
Disease (XLA)
---
A/B
C
154
S
23
UniProt
VAR_008302
C
155
G
BTK_HUMAN
Disease (XLA)
---
A/B
C
155
G
24
UniProt
VAR_008303
C
155
R
BTK_HUMAN
Disease (XLA)
---
A/B
C
155
R
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: PH_DOMAIN (A:3-133,B:3-133)
2: ZF_BTK (A:135-170,B:135-170)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PH_DOMAIN
PS50003
PH domain profile.
BTK_HUMAN
3-133
2
A:3-133
B:3-133
2
ZF_BTK
PS51113
Zinc finger Btk-type profile.
BTK_HUMAN
135-171
2
A:135-170
B:135-170
[
close PROSITE info
]
Exons
(5, 10)
Info
All Exons
Exon 1.3 (A:2-47 | B:2-47)
Exon 1.4a (A:48-79 | B:48-80)
Exon 1.5 (A:89-103 | B:81-103)
Exon 1.6 (A:104-131 | B:104-131)
Exon 1.7b (A:131-170 | B:131-170 (gaps))
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.1b/1.3
2: Boundary 1.3/1.4a
3: Boundary 1.4a/1.5
4: Boundary 1.5/1.6
5: Boundary 1.6/1.7b
6: Boundary 1.7b/1.8b
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000308731
1b
ENSE00001821870
X:100641183-100641050
134
BTK_HUMAN
-
0
0
-
-
1.3
ENST00000308731
3
ENSE00002149458
X:100630302-100630132
171
BTK_HUMAN
1-47
47
2
A:2-47
B:2-47
46
46
1.4a
ENST00000308731
4a
ENSE00001643950
X:100629622-100629524
99
BTK_HUMAN
48-80
33
2
A:48-79
B:48-80
32
33
1.5
ENST00000308731
5
ENSE00001646803
X:100626689-100626621
69
BTK_HUMAN
81-103
23
2
A:89-103
B:81-103
15
23
1.6
ENST00000308731
6
ENSE00001698702
X:100625067-100624986
82
BTK_HUMAN
104-131
28
2
A:104-131
B:104-131
28
28
1.7b
ENST00000308731
7b
ENSE00001643964
X:100617677-100617549
129
BTK_HUMAN
131-174
44
2
A:131-170
B:131-170 (gaps)
40
50
1.8b
ENST00000308731
8b
ENSE00001601394
X:100617228-100617161
68
BTK_HUMAN
174-196
23
0
-
-
1.9
ENST00000308731
9
ENSE00001608013
X:100615743-100615556
188
BTK_HUMAN
197-259
63
0
-
-
1.10
ENST00000308731
10
ENSE00001712685
X:100615138-100615076
63
BTK_HUMAN
259-280
22
0
-
-
1.11
ENST00000308731
11
ENSE00001801955
X:100614335-100614281
55
BTK_HUMAN
280-298
19
0
-
-
1.12
ENST00000308731
12
ENSE00000673984
X:100613684-100613605
80
BTK_HUMAN
299-325
27
0
-
-
1.13b
ENST00000308731
13b
ENSE00000673983
X:100613425-100613298
128
BTK_HUMAN
325-368
44
0
-
-
1.14b
ENST00000308731
14b
ENSE00000673982
X:100612571-100612497
75
BTK_HUMAN
368-393
26
0
-
-
1.15a
ENST00000308731
15a
ENSE00000673981
X:100611943-100611772
172
BTK_HUMAN
393-450
58
0
-
-
1.16b
ENST00000308731
16b
ENSE00000673980
X:100611256-100611040
217
BTK_HUMAN
450-522
73
0
-
-
1.17
ENST00000308731
17
ENSE00000673977
X:100609682-100609618
65
BTK_HUMAN
523-544
22
0
-
-
1.18b
ENST00000308731
18b
ENSE00001780523
X:100608976-100608858
119
BTK_HUMAN
544-584
41
0
-
-
1.19b
ENST00000308731
19b
ENSE00001702496
X:100608339-100608182
158
BTK_HUMAN
584-636
53
0
-
-
1.20b
ENST00000308731
20b
ENSE00001855631
X:100604944-100604438
507
BTK_HUMAN
637-659
23
0
-
-
[
close EXON info
]
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1btka_ (A:)
1b: SCOP_d1btkb_ (B:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
PH domain-like barrel
(258)
Superfamily
:
PH domain-like
(257)
Family
:
Pleckstrin-homology domain (PH domain)
(102)
Protein domain
:
Bruton's tyrosine kinase
(3)
Human (Homo sapiens) [TaxId: 9606]
(3)
1a
d1btka_
A:
1b
d1btkb_
B:
[
close SCOP info
]
CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1btkA00 (A:2-170)
1b: CATH_1btkB00 (B:2-170)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Roll
(1513)
Topology
:
PH-domain like
(150)
Homologous Superfamily
:
Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)
(147)
Human (Homo sapiens)
(85)
1a
1btkA00
A:2-170
1b
1btkB00
B:2-170
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
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]
Atom Selection
(currently selected atoms:
all
)
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Nucleic
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