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1BSX
Asym. Unit
Info
Asym.Unit (82 KB)
Biol.Unit 1 (76 KB)
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Title
:
STRUCTURE AND SPECIFICITY OF NUCLEAR RECEPTOR-COACTIVATOR INTERACTIONS
Authors
:
R. L. Wagner, B. D. Darimont, J. W. Apriletti, M. R. Stallcup, P. J. Kushner, J. D. Baxter, R. J. Fletterick, K. R. Yamamoto
Date
:
31 Aug 98 (Deposition) - 26 Aug 99 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.70
Chains
:
Asym. Unit : A,B,X,Y
Biol. Unit 1: A,B,X,Y (1x)
Keywords
:
Nuclear Receptors, Coactivators, Grip1, Specificity Interaction Site, Hormone/Growth Factor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. D. Darimont, R. L. Wagner, J. W. Apriletti, M. R. Stallcup, P. J. Kushner, J. D. Baxter, R. J. Fletterick, K. R. Yamamoto
Structure And Specificity Of Nuclear Receptor-Coactivator Interactions.
Genes Dev. V. 12 3343 1998
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(1, 2)
Info
All Hetero Components
1a: 3,5,3'TRIIODOTHYRONINE (T3a)
1b: 3,5,3'TRIIODOTHYRONINE (T3b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
T3
2
Ligand/Ion
3,5,3'TRIIODOTHYRONINE
[
close Hetero Component info
]
Sites
(4, 4)
Info
All Sites
1: A (AUTHOR)
2: AC1 (SOFTWARE)
3: AC2 (SOFTWARE)
4: B (AUTHOR)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
A
AUTHOR
VAL A:284 , ALA A:287 , LYS A:288 , PHE A:293 , ILE A:302 , LEU A:305 , LEU A:454 , GLU A:457 , VAL A:458
NR-BOX BINDING SITE
2
AC1
SOFTWARE
PHE A:272 , ARG A:282 , LEU A:330 , ASN A:331 , LEU A:346 , ILE A:353 , HIS A:435 , MET A:442 , PHE A:455
BINDING SITE FOR RESIDUE T3 A 1
3
AC2
SOFTWARE
PHE B:272 , ARG B:282 , LEU B:330 , ASN B:331 , LEU B:346 , ILE B:353 , HIS B:435 , MET B:442 , PHE B:455
BINDING SITE FOR RESIDUE T3 B 2
4
B
AUTHOR
VAL B:284 , ALA B:287 , LYS B:288 , PHE B:293 , ILE B:302 , LEU B:305 , LEU B:454 , GLU B:457 , VAL B:458
NR-BOX BINDING SITE
[
close Site info
]
SAPs(SNPs)/Variants
(35, 70)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_050577 (D216G, chain A/B, )
02: VAR_004632 (A234T, chain A/B, )
03: VAR_004633 (R243W, chain A/B, )
04: VAR_059041 (A268G, chain A/B, )
05: VAR_004634 (R316H, chain A/B, )
06: VAR_004635 (A317T, chain A/B, )
07: VAR_004636 (R320C, chain A/B, )
08: VAR_004637 (R320H, chain A/B, )
09: VAR_059042 (N331D, chain A/B, )
10: VAR_004638 (G332R, chain A/B, )
11: VAR_059043 (A335P, chain A/B, )
12: VAR_011784 (T337I, chain A/B, )
13: VAR_004640 (R338W, chain A/B, )
14: VAR_004641 (Q340H, chain A/B, )
15: VAR_059044 (L341P, chain A/B, )
16: VAR_004642 (K342I, chain A/B, )
17: VAR_004645 (G345R, chain A/B, )
18: VAR_004644 (G345S, chain A/B, )
19: VAR_004643 (G345V, chain A/B, )
20: VAR_059045 (L346F, chain A/B, )
21: VAR_004646 (G347E, chain A/B, )
22: VAR_004647 (V348E, chain A/B, )
23: VAR_004648 (T426I, chain A/B, )
24: VAR_058508 (R429Q, chain A/B, )
25: VAR_059046 (I431M, chain A/B, )
26: VAR_004649 (R438H, chain A/B, )
27: VAR_004650 (M442V, chain A/B, )
28: VAR_004651 (K443E, chain A/B, )
29: VAR_004652 (C446R, chain A/B, )
30: VAR_059047 (P447T, chain A/B, )
31: VAR_004653 (P453H, chain A/B, )
32: VAR_059048 (P453L, chain A/B, )
33: VAR_004654 (P453S, chain A/B, )
34: VAR_004655 (P453T, chain A/B, )
35: VAR_059049 (F459C, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_050577
D
216
G
THB_HUMAN
Polymorphism
9865746
A/B
D
216
G
02
UniProt
VAR_004632
A
234
T
THB_HUMAN
Disease (GTHR)
---
A/B
A
234
T
03
UniProt
VAR_004633
R
243
W
THB_HUMAN
Disease (GTHR)
---
A/B
R
243
W
04
UniProt
VAR_059041
A
268
G
THB_HUMAN
Disease (GTHR)
---
A/B
A
268
G
05
UniProt
VAR_004634
R
316
H
THB_HUMAN
Disease (PRTH)
---
A/B
R
316
H
06
UniProt
VAR_004635
A
317
T
THB_HUMAN
Disease (GTHR)
---
A/B
A
317
T
07
UniProt
VAR_004636
R
320
C
THB_HUMAN
Disease (GTHR)
---
A/B
R
320
C
08
UniProt
VAR_004637
R
320
H
THB_HUMAN
Disease (GTHR)
---
A/B
R
320
H
09
UniProt
VAR_059042
N
331
D
THB_HUMAN
Disease (GTHR)
---
A/B
N
331
D
10
UniProt
VAR_004638
G
332
R
THB_HUMAN
Disease (GTHR)
28999969
A/B
G
332
R
11
UniProt
VAR_059043
A
335
P
THB_HUMAN
Disease (GTHR)
---
A/B
A
335
P
12
UniProt
VAR_011784
T
337
I
THB_HUMAN
Polymorphism
1054624
A/B
T
337
I
13
UniProt
VAR_004640
R
338
W
THB_HUMAN
Disease (GTHR)
---
A/B
R
338
W
14
UniProt
VAR_004641
Q
340
H
THB_HUMAN
Disease (GTHR)
---
A/B
Q
340
H
15
UniProt
VAR_059044
L
341
P
THB_HUMAN
Disease (GTHR)
---
A/B
L
341
P
16
UniProt
VAR_004642
K
342
I
THB_HUMAN
Disease (GTHR)
---
A/B
K
342
I
17
UniProt
VAR_004645
G
345
R
THB_HUMAN
Disease (GTHR)
---
A/B
G
345
R
18
UniProt
VAR_004644
G
345
S
THB_HUMAN
Disease (GTHR)
---
A/B
G
345
S
19
UniProt
VAR_004643
G
345
V
THB_HUMAN
Disease (GTHR)
28999970
A/B
G
345
V
20
UniProt
VAR_059045
L
346
F
THB_HUMAN
Disease (GTHR)
---
A/B
L
346
F
21
UniProt
VAR_004646
G
347
E
THB_HUMAN
Disease (GTHR)
28999971
A/B
G
347
E
22
UniProt
VAR_004647
V
348
E
THB_HUMAN
Disease (GTHR)
---
A/B
V
348
E
23
UniProt
VAR_004648
T
426
I
THB_HUMAN
Disease (GTHR)
---
A/B
T
426
I
24
UniProt
VAR_058508
R
429
Q
THB_HUMAN
Disease (PRTH)
---
A/B
R
429
Q
25
UniProt
VAR_059046
I
431
M
THB_HUMAN
Disease (GTHR)
---
A/B
I
431
M
26
UniProt
VAR_004649
R
438
H
THB_HUMAN
Disease (GTHR)
---
A/B
R
438
H
27
UniProt
VAR_004650
M
442
V
THB_HUMAN
Disease (GTHR)
---
A/B
M
442
V
28
UniProt
VAR_004651
K
443
E
THB_HUMAN
Disease (GTHR)
---
A/B
K
443
E
29
UniProt
VAR_004652
C
446
R
THB_HUMAN
Disease (GTHR)
---
A/B
C
446
R
30
UniProt
VAR_059047
P
447
T
THB_HUMAN
Disease (GTHR)
---
A/B
P
447
T
31
UniProt
VAR_004653
P
453
H
THB_HUMAN
Disease (GTHR)
---
A/B
P
453
H
32
UniProt
VAR_059048
P
453
L
THB_HUMAN
Disease (GTHR)
---
A/B
P
453
L
33
UniProt
VAR_004654
P
453
S
THB_HUMAN
Disease (GTHR)
---
A/B
P
453
S
34
UniProt
VAR_004655
P
453
T
THB_HUMAN
Disease (GTHR)
28933408
A/B
P
453
T
35
UniProt
VAR_059049
F
459
C
THB_HUMAN
Disease (GTHR)
---
A/B
F
459
C
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(4, 8)
Info
All Exons
Exon 1.14 (A:211-246 | B:211-246)
Exon 1.15 (A:247-295 (gaps) | B:247-295 (gaps...)
Exon 1.16 (A:296-382 | B:296-382)
Exon 1.17d (A:382-461 | B:382-461)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.13b/1.14
2: Boundary 1.14/1.15
3: Boundary 1.15/1.16
4: Boundary 1.16/1.17d
5: Boundary 1.17d/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2g
ENST00000396671
2g
ENSE00001687497
chr3:
24536266-24536178
89
THB_HUMAN
-
0
0
-
-
1.5
ENST00000396671
5
ENSE00001395906
chr3:
24378862-24378791
72
THB_HUMAN
-
0
0
-
-
1.7a
ENST00000396671
7a
ENSE00001612462
chr3:
24338862-24338717
146
THB_HUMAN
-
0
0
-
-
1.8b
ENST00000396671
8b
ENSE00001397913
chr3:
24270492-24270429
64
THB_HUMAN
1-8
8
0
-
-
1.10c
ENST00000396671
10c
ENSE00001693312
chr3:
24231825-24231565
261
THB_HUMAN
8-95
88
0
-
-
1.12e
ENST00000396671
12e
ENSE00001642867
chr3:
24193981-24193881
101
THB_HUMAN
95-128
34
0
-
-
1.13b
ENST00000396671
13b
ENSE00001073518
chr3:
24188313-24188166
148
THB_HUMAN
129-178
50
0
-
-
1.14
ENST00000396671
14
ENSE00001073519
chr3:
24185197-24184992
206
THB_HUMAN
178-246
69
2
A:211-246
B:211-246
36
36
1.15
ENST00000396671
15
ENSE00001073517
chr3:
24174953-24174807
147
THB_HUMAN
247-295
49
2
A:247-295 (gaps)
B:247-295 (gaps)
49
49
1.16
ENST00000396671
16
ENSE00001718132
chr3:
24169248-24168990
259
THB_HUMAN
296-382
87
2
A:296-382
B:296-382
87
87
1.17d
ENST00000396671
17d
ENSE00001406950
chr3:
24164616-24158651
5966
THB_HUMAN
382-461
80
2
A:382-461
B:382-461
80
80
[
close EXON info
]
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1bsxa_ (A:)
1b: SCOP_d1bsxb_ (B:)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Nuclear receptor ligand-binding domain
(609)
Superfamily
:
Nuclear receptor ligand-binding domain
(609)
Family
:
Nuclear receptor ligand-binding domain
(598)
Protein domain
:
Thyroid hormone receptor beta (TR-beta)
(15)
Human (Homo sapiens) [TaxId: 9606]
(15)
1a
d1bsxa_
A:
1b
d1bsxb_
B:
[
close SCOP info
]
CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1bsxA00 (A:211-461)
1b: CATH_1bsxB00 (B:211-461)
View:
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(
)
(
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Architectures
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)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Retinoid X Receptor
(409)
Homologous Superfamily
:
Retinoid X Receptor
(409)
Human (Homo sapiens)
(337)
1a
1bsxA00
A:211-461
1b
1bsxB00
B:211-461
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
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(currently selected atoms:
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Asym.Unit (82 KB)
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