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1BRP
Asym. Unit
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Asym.Unit (36 KB)
Biol.Unit 1 (32 KB)
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Title
:
CRYSTAL STRUCTURE OF THE TRIGONAL FORM OF HUMAN PLASMA RETINOL-BINDING PROTEIN AT 2.5 ANGSTROMS RESOLUTION
Authors
:
G. Zanotti, H. L. Monaco
Date
:
27 Jul 92 (Deposition) - 31 Jan 94 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Retinol Transport
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. Zanotti, S. Ottonello, R. Berni, H. L. Monaco
Crystal Structure Of The Trigonal Form Of Human Plasma Retinol-Binding Protein At 2. 5 A Resolution.
J. Mol. Biol. V. 230 613 1993
(for further references see the
PDB file header
)
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: RETINOL (RTLa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
RTL
1
Ligand/Ion
RETINOL
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: R1 (UNKNOWN)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
PHE A:36 , LEU A:37 , ALA A:57 , VAL A:61 , MET A:88 , TYR A:90 , GLN A:98 , PHE A:135
BINDING SITE FOR RESIDUE RTL A 183
2
R1
UNKNOWN
ALA A:43 , PHE A:45 , ALA A:55 , ALA A:57 , MET A:73 , MET A:88 , HIS A:104 , TYR A:133 , PHE A:135 , LEU A:35 , PHE A:36 , LEU A:37 , VAL A:61 , TYR A:90 , GLN A:98
NULL
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SAPs(SNPs)/Variants
(2, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_009276 (I41N, chain A, )
2: VAR_009277 (G75D, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_009276
I
59
N
RET4_HUMAN
Disease (RDCCAS)
121918584
A
I
41
N
2
UniProt
VAR_009277
G
93
D
RET4_HUMAN
Disease (RDCCAS)
121918585
A
G
75
D
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: LIPOCALIN (A:14-27)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
LIPOCALIN
PS00213
Lipocalin signature.
RET4_HUMAN
32-45
1
A:14-27
[
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Exons
(5, 5)
Info
All Exons
Exon 1.4a (A:1-19)
Exon 1.5a (A:20-65)
Exon 1.6 (A:65-101)
Exon 1.8a (A:101-172)
Exon 1.9c (A:172-175)
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All Exon Boundaries
1: Boundary 1.2a/1.4a
2: Boundary 1.4a/1.5a
3: Boundary 1.5a/1.6
4: Boundary 1.6/1.8a
5: Boundary 1.8a/1.9c
6: Boundary 1.9c/-
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2a
ENST00000371467
2a
ENSE00001455291
chr10:
95361420-95361119
302
RET4_HUMAN
-
0
0
-
-
1.4a
ENST00000371467
4a
ENSE00001455290
chr10:
95360803-95360675
129
RET4_HUMAN
1-37
37
1
A:1-19
19
1.5a
ENST00000371467
5a
ENSE00000932979
chr10:
95360560-95360424
137
RET4_HUMAN
38-83
46
1
A:20-65
46
1.6
ENST00000371467
6
ENSE00000932978
chr10:
95360256-95360150
107
RET4_HUMAN
83-119
37
1
A:65-101
37
1.8a
ENST00000371467
8a
ENSE00000932977
chr10:
95353792-95353580
213
RET4_HUMAN
119-190
72
1
A:101-172
72
1.9c
ENST00000371467
9c
ENSE00001455294
chr10:
95351869-95351444
426
RET4_HUMAN
190-201
12
1
A:172-175
4
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1brpa_ (A:)
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Classes
(
)
(
)
Folds
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)
(
)
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)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Lipocalins
(514)
Superfamily
:
Lipocalins
(514)
Family
:
Retinol binding protein-like
(261)
Protein domain
:
Retinol binding protein
(23)
Human (Homo sapiens) [TaxId: 9606]
(9)
1a
d1brpa_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1brpA00 (A:1-175)
View:
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Classes
(
)
(
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Homologous Superfamilies
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)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Lipocalin
(526)
Homologous Superfamily
:
[code=2.40.128.20, no name defined]
(352)
Human (Homo sapiens)
(91)
1a
1brpA00
A:1-175
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Chain A
Asymmetric Unit 1
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