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1BQS
Asym. Unit
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Asym.Unit (40 KB)
Biol.Unit 1 (35 KB)
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(1)
Title
:
THE CRYSTAL STRUCTURE OF MUCOSAL ADDRESSIN CELL ADHESION MOLECULE-1 (MADCAM-1)
Authors
:
K. Tan, J. M. Casasnovas, J. H. Liu, M. J. Briskin, T. A. Springer, J. - H. Wang
Date
:
18 Aug 98 (Deposition) - 13 Aug 99 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Cell Adhesion Protein, Madcam-1, Immunoglobulin Fold, I-Set Fold, Cell Adhesion Glycoprotein, Integrin Recoginition, Membrane Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Tan, J. M. Casasnovas, J. H. Liu, M. J. Briskin, T. A. Springer, J. H. Wang
The Structure Of Immunoglobulin Superfamily Domains 1 And 2 Of Madcam-1 Reveals Novel Features Important For Integrin Recognition.
Structure V. 6 793 1998
(for further references see the
PDB file header
)
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGa)
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Label:
No.
Name
Count
Type
Full Name
1
NDG
1
Ligand/Ion
2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASN A:61 , GLU A:152 , PRO A:153 , GLN A:154 , GLY A:155 , ASP A:156
BINDING SITE FOR RESIDUE NDG A 401
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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;
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Exons
(3, 3)
Info
All Exons
Exon 1.2 (A:1-91)
Exon 1.3 (A:91-201)
Exon 1.4 (A:201-209)
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All Exon Boundaries
1: Boundary 1.1b/1.2
2: Boundary 1.2/1.3
3: Boundary 1.3/1.4
4: Boundary 1.4/1.5b
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000215637
1b
ENSE00001155662
chr19:
496490-496551
62
MADCA_HUMAN
1-18
18
0
-
-
1.2
ENST00000215637
2
ENSE00000892393
chr19:
497833-498117
285
MADCA_HUMAN
18-113
96
1
A:1-91
91
1.3
ENST00000215637
3
ENSE00000655528
chr19:
498496-498825
330
MADCA_HUMAN
113-223
111
1
A:91-201
111
1.4
ENST00000215637
4
ENSE00000655530
chr19:
501669-501929
261
MADCA_HUMAN
223-310
88
1
A:201-209
9
1.5b
ENST00000215637
5b
ENSE00001214973
chr19:
504745-505340
596
MADCA_HUMAN
310-382
73
0
-
-
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1bqsa1 (A:1-90)
1b: SCOP_d1bqsa2 (A:91-209)
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)
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)
(
)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
I set domains
(152)
Protein domain
:
Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d1bqsa1
A:1-90
1b
d1bqsa2
A:91-209
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1bqsA02 (A:91-209)
1b: CATH_1bqsA01 (A:1-90)
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Homologous Superfamilies
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)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
Human (Homo sapiens)
(912)
1a
1bqsA02
A:91-209
1b
1bqsA01
A:1-90
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Pfam Domains
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Chain A
Asymmetric Unit 1
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