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1BQQ
Asym. Unit
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Asym.Unit (71 KB)
Biol.Unit 1 (65 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE MT1-MMP--TIMP-2 COMPLEX
Authors
:
C. Fernandez-Catalan, W. Bode, R. Huber, D. Turk, J. J. Calvete, A. Lichte, H. Tschesche, K. Maskos
Date
:
18 Aug 98 (Deposition) - 18 Aug 99 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.75
Chains
:
Asym. Unit : M,T
Biol. Unit 1: M,T (1x)
Keywords
:
Matrix Metalloproteinase, Tissue Inhibitor Of Metalloproteinases, Proteinase Complex, Pro-Gelatinase A Activator, Crystal Structure, Complex (Metalloproteinase/Receptor), Hydrolase/Hydrolase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Fernandez-Catalan, W. Bode, R. Huber, D. Turk, J. J. Calvete, A. Lichte, H. Tschesche, K. Maskos
Crystal Structure Of The Complex Formed By The Membrane Type 1-Matrix Metalloproteinase With The Tissue Inhibitor Of Metalloproteinases-2, The Soluble Progelatinase A Receptor.
Embo J. V. 17 5238 1998
(for further references see the
PDB file header
)
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
2a: ZINC ION (ZNa)
2b: ZINC ION (ZNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
2
Ligand/Ion
CALCIUM ION
2
ZN
2
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP M:176 , ASN M:208 , GLY M:210 , ASP M:212
BINDING SITE FOR RESIDUE CA M 288
2
AC2
SOFTWARE
HIS M:239 , HIS M:243 , HIS M:249 , CYS T:1001
BINDING SITE FOR RESIDUE ZN M 289
3
AC3
SOFTWARE
HIS M:186 , ASP M:188 , HIS M:201 , HIS M:214
BINDING SITE FOR RESIDUE ZN M 290
4
AC4
SOFTWARE
ASP M:193 , GLY M:194 , GLY M:196 , PHE M:198 , ASP M:216 , GLU M:219
BINDING SITE FOR RESIDUE CA M 291
[
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SAPs(SNPs)/Variants
(2, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_021032 (I233V, chain M, )
2: VAR_021033 (D273N, chain M, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_021032
I
233
V
MMP14_HUMAN
Polymorphism
17884841
M
I
233
V
2
UniProt
VAR_021033
D
273
N
MMP14_HUMAN
Polymorphism
1042704
M
D
273
N
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: NTR (T:1001-1126)
2: TIMP (T:1001-1013)
3: ZINC_PROTEASE (M:236-245)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
NTR
PS50189
NTR domain profile.
TIMP2_BOVIN
27-152
1
T:1001-1126
2
TIMP
PS00288
Tissue inhibitors of metalloproteinases signature.
TIMP2_BOVIN
27-39
1
T:1001-1013
3
ZINC_PROTEASE
PS00142
Neutral zinc metallopeptidases, zinc-binding region signature.
MMP14_HUMAN
236-245
1
M:236-245
[
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]
Exons
(4, 4)
Info
All Exons
Exon 1.3 (M:114-127)
Exon 1.4 (M:127-230)
Exon 1.5 (M:230-284)
Exon 1.6 (M:284-287)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.2/1.3
2: Boundary 1.3/1.4
3: Boundary 1.4/1.5
4: Boundary 1.5/1.6
5: Boundary 1.6/1.7
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000311852
1
ENSE00001417791
chr14:
23305772-23306134
363
MMP14_HUMAN
1-36
36
0
-
-
1.2
ENST00000311852
2
ENSE00001031343
chr14:
23310700-23310848
149
MMP14_HUMAN
37-86
50
0
-
-
1.3
ENST00000311852
3
ENSE00001031341
chr14:
23311122-23311244
123
MMP14_HUMAN
86-127
42
1
M:114-127
14
1.4
ENST00000311852
4
ENSE00001031346
chr14:
23311619-23311926
308
MMP14_HUMAN
127-230
104
1
M:127-230
104
1.5
ENST00000311852
5
ENSE00001031364
chr14:
23312466-23312627
162
MMP14_HUMAN
230-284
55
1
M:230-284
55
1.6
ENST00000311852
6
ENSE00001198262
chr14:
23312919-23313079
161
MMP14_HUMAN
284-337
54
1
M:284-287
4
1.7
ENST00000311852
7
ENSE00001031362
chr14:
23313580-23313718
139
MMP14_HUMAN
338-384
47
0
-
-
1.8
ENST00000311852
8
ENSE00001031361
chr14:
23313839-23313989
151
MMP14_HUMAN
384-434
51
0
-
-
1.9
ENST00000311852
9
ENSE00001031354
chr14:
23314460-23314575
116
MMP14_HUMAN
434-473
40
0
-
-
1.10
ENST00000311852
10
ENSE00001431522
chr14:
23314917-23316970
2054
MMP14_HUMAN
473-582
110
0
-
-
[
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]
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d1bqqt_ (T:)
2a: SCOP_d1bqqm_ (M:)
View:
Select:
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Classes
(
)
(
)
Folds
(
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(
)
Superfamilies
(
)
(
)
Families
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
OB-fold
(1179)
Superfamily
:
TIMP-like
(22)
Family
:
Tissue inhibitor of metalloproteinases, TIMP
(13)
Protein domain
:
TIMP-2
(7)
Cow (Bos taurus) [TaxId: 9913]
(3)
1a
d1bqqt_
T:
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Zincin-like
(701)
Superfamily
:
Metalloproteases (zincins), catalytic domain
(647)
Family
:
Matrix metalloproteases, catalytic domain
(199)
Protein domain
:
Membrane-type matrix metalloproteinase (CDMT1-MMP)
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
2a
d1bqqm_
M:
[
close SCOP info
]
CATH Domains
(3, 3)
Info
all CATH domains
1a: CATH_1bqqM00 (M:114-287)
2a: CATH_1bqqT01 (T:1001-1014,T:1110-1182)
3a: CATH_1bqqT02 (T:1016-1109)
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(
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(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Collagenase (Catalytic Domain)
(236)
Homologous Superfamily
:
Collagenase (Catalytic Domain)
(234)
Human (Homo sapiens)
(153)
1a
1bqqM00
M:114-287
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Tissue inhibitor of metalloproteinase-1. Chain B, domain 1
(6)
Homologous Superfamily
:
Tissue inhibitor of metalloproteinase-1. Chain B, domain 1
(6)
Human (Homo sapiens)
(6)
2a
1bqqT01
T:1001-1014,T:1110-1182
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
OB fold (Dihydrolipoamide Acetyltransferase, E2P)
(1040)
Homologous Superfamily
:
[code=2.40.50.120, no name defined]
(16)
Human (Homo sapiens)
(12)
3a
1bqqT02
T:1016-1109
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Chain M
Chain T
Asymmetric Unit 1
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