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1BQO
Biol. Unit 1
Info
Asym.Unit (64 KB)
Biol.Unit 1 (59 KB)
Biol.Unit 2 (59 KB)
Biol.Unit 3 (87 KB)
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(1)
Title
:
DISCOVERY OF POTENT, ACHIRAL MATRIX METALLOPROTEINASE INHIBITORS
Authors
:
S. Pikul, K. L. M. Dunham, N. G. Almstead, B. De, M. G. Natchus, M. V. Anast S. J. Mcphail, C. E. Snider, Y. O. Taiwo, T. J. Rydel, C. M. Dunaway, F. Gu G. E. Mieling
Date
:
17 Aug 98 (Deposition) - 17 Aug 99 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Biol. Unit 2: A,B (1x)
Biol. Unit 3: A,B (2x)
Keywords
:
Stromelysin, Matrix Metalloprotease, Osteoarthritis, Structure-Based Drug Design, Metalloprotease
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Pikul, K. L. Mcdow Dunham, N. G. Almstead, B. De, M. G. Natchus, M. V. Anastasio, S. J. Mcphail, C. E. Snider, Y. O. Taiwo, T. Rydel, C. M. Dunaway, F. Gu, G. E. Mieling
Discovery Of Potent, Achiral Matrix Metalloproteinase Inhibitors.
J. Med. Chem. V. 41 3568 1998
[
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
2a: 1,3-BIS-(4-METHOXY-BENZENESULFONYL... (N25a)
3a: ZINC ION (ZNa)
3b: ZINC ION (ZNb)
3c: ZINC ION (ZNc)
3d: ZINC ION (ZNd)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CA
-1
Ligand/Ion
CALCIUM ION
2
N25
1
Ligand/Ion
1,3-BIS-(4-METHOXY-BENZENESULFONYL)-5,5-DIMETHYL-HEXAHYDRO-PYRIMIDINE-2-CARBOXYLIC ACID HYDROXYAMIDE
3
ZN
-1
Ligand/Ion
ZINC ION
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:201 , HIS A:205 , HIS A:211 , THR B:255
BINDING SITE FOR RESIDUE ZN A 301
02
AC2
SOFTWARE
HIS A:151 , ASP A:153 , HIS A:166 , HIS A:179
BINDING SITE FOR RESIDUE ZN A 302
03
AC3
SOFTWARE
ASP A:158 , GLY A:159 , GLY A:161 , VAL A:163 , ASP A:181 , GLU A:184
BINDING SITE FOR RESIDUE CA A 303
04
AC4
SOFTWARE
ASP A:107 , ASP A:182 , GLU A:184 , HOH A:342
BINDING SITE FOR RESIDUE CA A 304
05
AC5
SOFTWARE
ASP A:141 , GLY A:173 , ASN A:175 , ASP A:177 , HOH A:314
BINDING SITE FOR RESIDUE CA A 305
06
AC6
SOFTWARE
HIS B:201 , HIS B:205 , HIS B:211 , N25 B:401
BINDING SITE FOR RESIDUE ZN B 301
07
AC7
SOFTWARE
HIS B:151 , ASP B:153 , HIS B:166 , HIS B:179
BINDING SITE FOR RESIDUE ZN B 302
08
AC8
SOFTWARE
ASP B:158 , GLY B:159 , GLY B:161 , VAL B:163 , ASP B:181 , GLU B:184
BINDING SITE FOR RESIDUE CA B 303
09
AC9
SOFTWARE
ASP B:107 , ASP B:182 , GLU B:184 , HOH B:409
BINDING SITE FOR RESIDUE CA B 304
10
BC1
SOFTWARE
ASP B:141 , GLY B:173 , ASN B:175 , ASP B:177 , HOH B:402
BINDING SITE FOR RESIDUE CA B 305
11
BC2
SOFTWARE
ASN B:162 , VAL B:163 , LEU B:164 , ALA B:165 , HIS B:166 , VAL B:198 , HIS B:201 , GLU B:202 , HIS B:205 , HIS B:211 , ZN B:301
BINDING SITE FOR RESIDUE N25 B 401
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: ZINC_PROTEASE (A:198-207,B:198-207)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ZINC_PROTEASE
PS00142
Neutral zinc metallopeptidases, zinc-binding region signature.
MMP3_HUMAN
215-224
2
A:198-207
B:198-207
[
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1bqoa_ (A:)
1b: SCOP_d1bqob_ (B:)
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)
(
)
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(
)
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)
(
)
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Zincin-like
(701)
Superfamily
:
Metalloproteases (zincins), catalytic domain
(647)
Family
:
Matrix metalloproteases, catalytic domain
(199)
Protein domain
:
Stromelysin-1 (MMP-3)
(40)
Human (Homo sapiens), fibroblast [TaxId: 9606]
(40)
1a
d1bqoa_
A:
1b
d1bqob_
B:
[
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1bqoB00 (B:83-255)
1b: CATH_1bqoA00 (A:83-251)
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Classes
(
)
(
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)
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)
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Collagenase (Catalytic Domain)
(236)
Homologous Superfamily
:
Collagenase (Catalytic Domain)
(234)
Human (Homo sapiens)
(153)
1a
1bqoB00
B:83-255
1b
1bqoA00
A:83-251
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Asym.Unit (64 KB)
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Header - Biol.Unit 3
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