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1BPM
Asym. Unit
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Asym.Unit (80 KB)
Biol.Unit 1 (435 KB)
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(1)
Title
:
DIFFERENTIATION AND IDENTIFICATION OF THE TWO CATALYTIC METAL BINDING SITES IN BOVINE LENS LEUCINE AMINOPEPTIDASE BY X-RAY CRYSTALLOGRAPHY
Authors
:
H. Kim, W. N. Lipscomb
Date
:
02 Mar 93 (Deposition) - 15 Jul 93 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.90
Chains
:
Asym. Unit : A
Biol. Unit 1: A (6x)
Keywords
:
Hydrolase(Alpha-Aminoacylpeptide)
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Kim, W. N. Lipscomb
Differentiation And Identification Of The Two Catalytic Metal Binding Sites In Bovine Lens Leucine Aminopeptidase B X-Ray Crystallography.
Proc. Natl. Acad. Sci. Usa V. 90 5006 1993
(for further references see the
PDB file header
)
[
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: MAGNESIUM ION (MGa)
2a: ZINC ION (ZNa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MG
1
Ligand/Ion
MAGNESIUM ION
2
ZN
1
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(4, 4)
Info
All Sites
1: 488 (AUTHOR)
2: 489 (AUTHOR)
3: AC1 (SOFTWARE)
4: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
488
AUTHOR
MG A:488
THE ZINC OF THE NATIVE ENZYME OF *SITE 1* IS READILY EXCHANGEABLE
2
489
AUTHOR
ZN A:489
*SITE 2* BINDS THE ZINC MUCH MORE STRONGLY
3
AC1
SOFTWARE
ASP A:255 , ASP A:332 , GLU A:334 , ZN A:489
BINDING SITE FOR RESIDUE MG A 488
4
AC2
SOFTWARE
LYS A:250 , ASP A:255 , ASP A:273 , GLU A:334 , MG A:488
BINDING SITE FOR RESIDUE ZN A 489
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: CYTOSOL_AP (A:330-337)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CYTOSOL_AP
PS00631
Cytosol aminopeptidase signature.
AMPL_BOVIN
362-369
1
A:330-337
[
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Exons
(13, 13)
Info
All Exons
Exon 1.1 (A:1-2)
Exon 1.2 (A:3-41 (gaps))
Exon 1.3 (A:41-59)
Exon 1.4 (A:60-95)
Exon 1.5 (A:95-148)
Exon 1.6 (A:148-203)
Exon 1.7 (A:203-256)
Exon 1.8 (A:256-298)
Exon 1.9 (A:298-327)
Exon 1.10 (A:328-362)
Exon 1.11 (A:362-388)
Exon 1.12 (A:389-425)
Exon 1.13 (A:425-484)
View:
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All Exon Boundaries
01: Boundary -/1.1
02: Boundary 1.1/1.2
03: Boundary 1.2/1.3
04: Boundary 1.3/1.4
05: Boundary 1.4/1.5
06: Boundary 1.5/1.6
07: Boundary 1.6/1.7
08: Boundary 1.7/1.8
09: Boundary 1.8/1.9
10: Boundary 1.9/1.10
11: Boundary 1.10/1.11
12: Boundary 1.11/1.12
13: Boundary 1.12/1.13
14: Boundary 1.13/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSBTAT00000007860
1
ENSBTAE00000063203
chr6:
37961794-37961895
102
AMPL_BOVIN
1-34
34
1
A:1-2
2
1.2
ENSBTAT00000007860
2
ENSBTAE00000063205
chr6:
37964129-37964244
116
AMPL_BOVIN
35-73
39
1
A:3-41 (gaps)
39
1.3
ENSBTAT00000007860
3
ENSBTAE00000308864
chr6:
37965550-37965604
55
AMPL_BOVIN
73-91
19
1
A:41-59
19
1.4
ENSBTAT00000007860
4
ENSBTAE00000063209
chr6:
37966063-37966168
106
AMPL_BOVIN
92-127
36
1
A:60-95
36
1.5
ENSBTAT00000007860
5
ENSBTAE00000063210
chr6:
37967574-37967733
160
AMPL_BOVIN
127-180
54
1
A:95-148
54
1.6
ENSBTAT00000007860
6
ENSBTAE00000063212
chr6:
37969197-37969361
165
AMPL_BOVIN
180-235
56
1
A:148-203
56
1.7
ENSBTAT00000007860
7
ENSBTAE00000063213
chr6:
37971885-37972043
159
AMPL_BOVIN
235-288
54
1
A:203-256
54
1.8
ENSBTAT00000007860
8
ENSBTAE00000063215
chr6:
37977709-37977833
125
AMPL_BOVIN
288-330
43
1
A:256-298
43
1.9
ENSBTAT00000007860
9
ENSBTAE00000063217
chr6:
37978975-37979063
89
AMPL_BOVIN
330-359
30
1
A:298-327
30
1.10
ENSBTAT00000007860
10
ENSBTAE00000308863
chr6:
37979919-37980021
103
AMPL_BOVIN
360-394
35
1
A:328-362
35
1.11
ENSBTAT00000007860
11
ENSBTAE00000063220
chr6:
37984212-37984291
80
AMPL_BOVIN
394-420
27
1
A:362-388
27
1.12
ENSBTAT00000007860
12
ENSBTAE00000063222
chr6:
37986042-37986151
110
AMPL_BOVIN
421-457
37
1
A:389-425
37
1.13
ENSBTAT00000007860
13
ENSBTAE00000063223
chr6:
37986603-37987164
562
AMPL_BOVIN
457-519
63
1
A:425-484
60
[
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]
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d1bpma2 (A:1-159)
2a: SCOP_d1bpma1 (A:160-484)
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(
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Macro domain-like
(42)
Superfamily
:
Macro domain-like
(42)
Family
:
Leucine aminopeptidase (Aminopeptidase A), N-terminal domain
(8)
Protein domain
:
Leucine aminopeptidase (Aminopeptidase A), N-terminal domain
(8)
Cow (Bos taurus) [TaxId: 9913]
(7)
1a
d1bpma2
A:1-159
Fold
:
Phosphorylase/hydrolase-like
(558)
Superfamily
:
Zn-dependent exopeptidases
(214)
Family
:
Leucine aminopeptidase, C-terminal domain
(10)
Protein domain
:
Leucine aminopeptidase, C-terminal domain
(8)
Cow (Bos taurus) [TaxId: 9913]
(7)
2a
d1bpma1
A:160-484
[
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CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_1bpmA02 (A:166-483)
2a: CATH_1bpmA01 (A:1-165)
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(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Aminopeptidase
(284)
Homologous Superfamily
:
Zn peptidases
(137)
Bovine (Bos taurus)
(7)
1a
1bpmA02
A:166-483
Topology
:
Leucine Aminopeptidase, subunit E; domain 1
(21)
Homologous Superfamily
:
Leucine Aminopeptidase, subunit E, domain 1
(21)
Bovine (Bos taurus)
(4)
2a
1bpmA01
A:1-165
[
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Pfam Domains
(0, 0)
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all PFAM domains
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Chain A
Asymmetric Unit 1
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