PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
1BOS
Biol. Unit 4
Info
Asym.Unit (281 KB)
Biol.Unit 1 (74 KB)
Biol.Unit 2 (73 KB)
Biol.Unit 3 (74 KB)
Biol.Unit 4 (73 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
SHIGA-LIKE TOXIN COMPLEXED WITH ITS RECEPTOR
Authors
:
H. Ling, A. Boodhoo, B. Hazes, M. D. Cummings, G. D. Armstrong, J. L. Brunton, R. J. Read
Date
:
13 Jan 98 (Deposition) - 02 Feb 99 (Release) - 21 Jul 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T
Biol. Unit 1: A,B,C,D,E (1x)
Biol. Unit 2: F,G,H,I,J (1x)
Biol. Unit 3: K,L,M,N,O (1x)
Biol. Unit 4: P,Q,R,S,T (1x)
Keywords
:
Toxin, Receptor Binding, Protein-Carbohydrate Recognition, Ob-Fold
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Ling, A. Boodhoo, B. Hazes, M. D. Cummings, G. D. Armstrong, J. L. Brunton, R. J. Read
Structure Of The Shiga-Like Toxin I B-Pentamer Complexed With An Analogue Of Its Receptor Gb3.
Biochemistry V. 37 1777 1998
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(3, 36)
Info
All Hetero Components
1a: BETA-D-GLUCOSE (BGCa)
1aa: BETA-D-GLUCOSE (BGCaa)
1ab: BETA-D-GLUCOSE (BGCab)
1ac: BETA-D-GLUCOSE (BGCac)
1ad: BETA-D-GLUCOSE (BGCad)
1ae: BETA-D-GLUCOSE (BGCae)
1af: BETA-D-GLUCOSE (BGCaf)
1ag: BETA-D-GLUCOSE (BGCag)
1b: BETA-D-GLUCOSE (BGCb)
1c: BETA-D-GLUCOSE (BGCc)
1d: BETA-D-GLUCOSE (BGCd)
1e: BETA-D-GLUCOSE (BGCe)
1f: BETA-D-GLUCOSE (BGCf)
1g: BETA-D-GLUCOSE (BGCg)
1h: BETA-D-GLUCOSE (BGCh)
1i: BETA-D-GLUCOSE (BGCi)
1j: BETA-D-GLUCOSE (BGCj)
1k: BETA-D-GLUCOSE (BGCk)
1l: BETA-D-GLUCOSE (BGCl)
1m: BETA-D-GLUCOSE (BGCm)
1n: BETA-D-GLUCOSE (BGCn)
1o: BETA-D-GLUCOSE (BGCo)
1p: BETA-D-GLUCOSE (BGCp)
1q: BETA-D-GLUCOSE (BGCq)
1r: BETA-D-GLUCOSE (BGCr)
1s: BETA-D-GLUCOSE (BGCs)
1t: BETA-D-GLUCOSE (BGCt)
1u: BETA-D-GLUCOSE (BGCu)
1v: BETA-D-GLUCOSE (BGCv)
1w: BETA-D-GLUCOSE (BGCw)
1x: BETA-D-GLUCOSE (BGCx)
1y: BETA-D-GLUCOSE (BGCy)
1z: BETA-D-GLUCOSE (BGCz)
2a: BETA-D-GALACTOSE (GALa)
2aa: BETA-D-GALACTOSE (GALaa)
2ab: BETA-D-GALACTOSE (GALab)
2ac: BETA-D-GALACTOSE (GALac)
2ad: BETA-D-GALACTOSE (GALad)
2ae: BETA-D-GALACTOSE (GALae)
2af: BETA-D-GALACTOSE (GALaf)
2ag: BETA-D-GALACTOSE (GALag)
2ah: BETA-D-GALACTOSE (GALah)
2ai: BETA-D-GALACTOSE (GALai)
2aj: BETA-D-GALACTOSE (GALaj)
2ak: BETA-D-GALACTOSE (GALak)
2al: BETA-D-GALACTOSE (GALal)
2am: BETA-D-GALACTOSE (GALam)
2an: BETA-D-GALACTOSE (GALan)
2ao: BETA-D-GALACTOSE (GALao)
2ap: BETA-D-GALACTOSE (GALap)
2aq: BETA-D-GALACTOSE (GALaq)
2ar: BETA-D-GALACTOSE (GALar)
2as: BETA-D-GALACTOSE (GALas)
2at: BETA-D-GALACTOSE (GALat)
2au: BETA-D-GALACTOSE (GALau)
2av: BETA-D-GALACTOSE (GALav)
2aw: BETA-D-GALACTOSE (GALaw)
2ax: BETA-D-GALACTOSE (GALax)
2ay: BETA-D-GALACTOSE (GALay)
2az: BETA-D-GALACTOSE (GALaz)
2b: BETA-D-GALACTOSE (GALb)
2ba: BETA-D-GALACTOSE (GALba)
2bb: BETA-D-GALACTOSE (GALbb)
2bc: BETA-D-GALACTOSE (GALbc)
2bd: BETA-D-GALACTOSE (GALbd)
2be: BETA-D-GALACTOSE (GALbe)
2bf: BETA-D-GALACTOSE (GALbf)
2bg: BETA-D-GALACTOSE (GALbg)
2bh: BETA-D-GALACTOSE (GALbh)
2c: BETA-D-GALACTOSE (GALc)
2d: BETA-D-GALACTOSE (GALd)
2e: BETA-D-GALACTOSE (GALe)
2f: BETA-D-GALACTOSE (GALf)
2g: BETA-D-GALACTOSE (GALg)
2h: BETA-D-GALACTOSE (GALh)
2i: BETA-D-GALACTOSE (GALi)
2j: BETA-D-GALACTOSE (GALj)
2k: BETA-D-GALACTOSE (GALk)
2l: BETA-D-GALACTOSE (GALl)
2m: BETA-D-GALACTOSE (GALm)
2n: BETA-D-GALACTOSE (GALn)
2o: BETA-D-GALACTOSE (GALo)
2p: BETA-D-GALACTOSE (GALp)
2q: BETA-D-GALACTOSE (GALq)
2r: BETA-D-GALACTOSE (GALr)
2s: BETA-D-GALACTOSE (GALs)
2t: BETA-D-GALACTOSE (GALt)
2u: BETA-D-GALACTOSE (GALu)
2v: BETA-D-GALACTOSE (GALv)
2w: BETA-D-GALACTOSE (GALw)
2x: BETA-D-GALACTOSE (GALx)
2y: BETA-D-GALACTOSE (GALy)
2z: BETA-D-GALACTOSE (GALz)
3a: ALPHA D-GALACTOSE (GLAa)
3aa: ALPHA D-GALACTOSE (GLAaa)
3ab: ALPHA D-GALACTOSE (GLAab)
3ac: ALPHA D-GALACTOSE (GLAac)
3ad: ALPHA D-GALACTOSE (GLAad)
3ae: ALPHA D-GALACTOSE (GLAae)
3af: ALPHA D-GALACTOSE (GLAaf)
3ag: ALPHA D-GALACTOSE (GLAag)
3ah: ALPHA D-GALACTOSE (GLAah)
3ai: ALPHA D-GALACTOSE (GLAai)
3aj: ALPHA D-GALACTOSE (GLAaj)
3ak: ALPHA D-GALACTOSE (GLAak)
3al: ALPHA D-GALACTOSE (GLAal)
3am: ALPHA D-GALACTOSE (GLAam)
3an: ALPHA D-GALACTOSE (GLAan)
3ao: ALPHA D-GALACTOSE (GLAao)
3ap: ALPHA D-GALACTOSE (GLAap)
3aq: ALPHA D-GALACTOSE (GLAaq)
3ar: ALPHA D-GALACTOSE (GLAar)
3as: ALPHA D-GALACTOSE (GLAas)
3at: ALPHA D-GALACTOSE (GLAat)
3au: ALPHA D-GALACTOSE (GLAau)
3av: ALPHA D-GALACTOSE (GLAav)
3aw: ALPHA D-GALACTOSE (GLAaw)
3b: ALPHA D-GALACTOSE (GLAb)
3c: ALPHA D-GALACTOSE (GLAc)
3d: ALPHA D-GALACTOSE (GLAd)
3e: ALPHA D-GALACTOSE (GLAe)
3f: ALPHA D-GALACTOSE (GLAf)
3g: ALPHA D-GALACTOSE (GLAg)
3h: ALPHA D-GALACTOSE (GLAh)
3i: ALPHA D-GALACTOSE (GLAi)
3j: ALPHA D-GALACTOSE (GLAj)
3k: ALPHA D-GALACTOSE (GLAk)
3l: ALPHA D-GALACTOSE (GLAl)
3m: ALPHA D-GALACTOSE (GLAm)
3n: ALPHA D-GALACTOSE (GLAn)
3o: ALPHA D-GALACTOSE (GLAo)
3p: ALPHA D-GALACTOSE (GLAp)
3q: ALPHA D-GALACTOSE (GLAq)
3r: ALPHA D-GALACTOSE (GLAr)
3s: ALPHA D-GALACTOSE (GLAs)
3t: ALPHA D-GALACTOSE (GLAt)
3u: ALPHA D-GALACTOSE (GLAu)
3v: ALPHA D-GALACTOSE (GLAv)
3w: ALPHA D-GALACTOSE (GLAw)
3x: ALPHA D-GALACTOSE (GLAx)
3y: ALPHA D-GALACTOSE (GLAy)
3z: ALPHA D-GALACTOSE (GLAz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BGC
9
Ligand/Ion
BETA-D-GLUCOSE
2
GAL
15
Ligand/Ion
BETA-D-GALACTOSE
3
GLA
12
Ligand/Ion
ALPHA D-GALACTOSE
[
close Hetero Component info
]
Sites
(40, 40)
Info
All Sites
01: BC1 (SOFTWARE)
02: BC2 (SOFTWARE)
03: BC3 (SOFTWARE)
04: BC9 (SOFTWARE)
05: CC4 (SOFTWARE)
06: CC5 (SOFTWARE)
07: CC6 (SOFTWARE)
08: DC7 (SOFTWARE)
09: DC8 (SOFTWARE)
10: DC9 (SOFTWARE)
11: FC1 (SOFTWARE)
12: FC2 (SOFTWARE)
13: FC3 (SOFTWARE)
14: GC4 (SOFTWARE)
15: GC5 (SOFTWARE)
16: GC6 (SOFTWARE)
17: HC5 (SOFTWARE)
18: HC6 (SOFTWARE)
19: IC4 (SOFTWARE)
20: IC5 (SOFTWARE)
21: IC6 (SOFTWARE)
22: JC4 (SOFTWARE)
23: JC5 (SOFTWARE)
24: JC6 (SOFTWARE)
25: KC4 (SOFTWARE)
26: KC5 (SOFTWARE)
27: LC5 (SOFTWARE)
28: LC6 (SOFTWARE)
29: MC4 (SOFTWARE)
30: MC7 (SOFTWARE)
31: MC8 (SOFTWARE)
32: MC9 (SOFTWARE)
33: NC1 (SOFTWARE)
34: NC2 (SOFTWARE)
35: NC3 (SOFTWARE)
36: OC1 (SOFTWARE)
37: OC2 (SOFTWARE)
38: OC3 (SOFTWARE)
39: PC6 (SOFTWARE)
40: PC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
BC1
SOFTWARE
THR P:4131 , ASN P:4132 , ARG P:4133 , PHE P:4163 , GAL P:4191 , HOH P:5201 , ASP Q:4216
BINDING SITE FOR RESIDUE GLA P 4190
02
BC2
SOFTWARE
THR P:4101 , THR P:4154 , ASN P:4155 , GLY P:4162 , GLA P:4190 , BGC P:4192 , HOH P:5201 , HOH P:5236
BINDING SITE FOR RESIDUE GAL P 4191
03
BC3
SOFTWARE
ASN P:4155 , GAL P:4191 , HOH P:5315
BINDING SITE FOR RESIDUE BGC P 4192
04
BC9
SOFTWARE
GAL G:2291 , LYS T:4508 , THR T:4549
BINDING SITE FOR RESIDUE BGC G 2292
05
CC4
SOFTWARE
THR Q:4231 , ASN Q:4232 , ARG Q:4233 , GLY Q:4262 , PHE Q:4263 , GAL Q:4291 , ASP R:4316
BINDING SITE FOR RESIDUE GLA Q 4290
06
CC5
SOFTWARE
THR Q:4254 , ASN Q:4255 , GLY Q:4262 , GLA Q:4290 , BGC Q:4292 , HOH Q:5071
BINDING SITE FOR RESIDUE GAL Q 4291
07
CC6
SOFTWARE
ASN Q:4255 , GAL Q:4291 , HOH Q:5071 , HOH Q:5226
BINDING SITE FOR RESIDUE BGC Q 4292
08
DC7
SOFTWARE
THR R:4331 , ASN R:4332 , ARG R:4333 , PHE R:4363 , GAL R:4391 , HOH R:5135 , ASP S:4416
BINDING SITE FOR RESIDUE GLA R 4390
09
DC8
SOFTWARE
THR R:4301 , THR R:4354 , ASN R:4355 , GLY R:4362 , GLA R:4390 , BGC R:4392 , HOH R:5066
BINDING SITE FOR RESIDUE GAL R 4391
10
DC9
SOFTWARE
THR D:1449 , GAL R:4391
BINDING SITE FOR RESIDUE BGC R 4392
11
FC1
SOFTWARE
THR S:4431 , ASN S:4432 , ARG S:4433 , GLY S:4462 , PHE S:4463 , GAL S:4491 , ASP T:4516
BINDING SITE FOR RESIDUE GLA S 4490
12
FC2
SOFTWARE
THR S:4401 , THR S:4454 , ASN S:4455 , GLY S:4462 , GLA S:4490 , BGC S:4492
BINDING SITE FOR RESIDUE GAL S 4491
13
FC3
SOFTWARE
GAL S:4491
BINDING SITE FOR RESIDUE BGC S 4492
14
GC4
SOFTWARE
ASP P:4116 , THR T:4531 , ASN T:4532 , ARG T:4533 , GLY T:4562 , PHE T:4563 , GAL T:4591
BINDING SITE FOR RESIDUE GLA T 4590
15
GC5
SOFTWARE
THR T:4554 , ASN T:4555 , GLY T:4562 , GLA T:4590 , BGC T:4592
BINDING SITE FOR RESIDUE GAL T 4591
16
GC6
SOFTWARE
GAL T:4591
BINDING SITE FOR RESIDUE BGC T 4592
17
HC5
SOFTWARE
ARG P:4133 , TRP P:4134 , ASN P:4135 , GAL P:4181 , ASP Q:4218 , TRP Q:4234
BINDING SITE FOR RESIDUE GLA P 4180
18
HC6
SOFTWARE
TRP P:4134 , GLA P:4180 , HOH P:5249
BINDING SITE FOR RESIDUE GAL P 4181
19
IC4
SOFTWARE
ARG Q:4233 , TRP Q:4234 , ASN Q:4235 , GAL Q:4281 , HOH Q:5141 , TYR R:4314 , ASP R:4318
BINDING SITE FOR RESIDUE GLA Q 4280
20
IC5
SOFTWARE
TRP Q:4234 , GLA Q:4280 , BGC Q:4282
BINDING SITE FOR RESIDUE GAL Q 4281
21
IC6
SOFTWARE
GAL Q:4281
BINDING SITE FOR RESIDUE BGC Q 4282
22
JC4
SOFTWARE
ARG R:4333 , TRP R:4334 , ASN R:4335 , GAL R:4381 , ASP S:4418
BINDING SITE FOR RESIDUE GLA R 4380
23
JC5
SOFTWARE
TRP R:4334 , GLA R:4380 , BGC R:4382
BINDING SITE FOR RESIDUE GAL R 4381
24
JC6
SOFTWARE
GAL R:4381 , HOH R:5328
BINDING SITE FOR RESIDUE BGC R 4382
25
KC4
SOFTWARE
ARG S:4433 , TRP S:4434 , ASN S:4435 , GAL S:4481 , ASP T:4518 , TRP T:4534
BINDING SITE FOR RESIDUE GLA S 4480
26
KC5
SOFTWARE
TRP S:4434 , GLA S:4480 , HOH S:5237
BINDING SITE FOR RESIDUE GAL S 4481
27
LC5
SOFTWARE
ASP P:4118 , TRP P:4134 , ARG T:4533 , TRP T:4534 , ASN T:4535 , GAL T:4581
BINDING SITE FOR RESIDUE GLA T 4580
28
LC6
SOFTWARE
TRP T:4534 , GLA T:4580 , HOH T:5246
BINDING SITE FOR RESIDUE GAL T 4581
29
MC4
SOFTWARE
LYS P:4113 , ASN P:4115 , THR P:4121 , GLU P:4128 , PHE P:4130 , GLY P:4160 , HOH P:5195 , HOH P:5340
BINDING SITE FOR RESIDUE GAL P 4170
30
MC7
SOFTWARE
ASN Q:4215 , THR Q:4221 , GLU Q:4228 , PHE Q:4230 , GLY Q:4260 , GAL Q:4271 , HOH Q:5087
BINDING SITE FOR RESIDUE GLA Q 4270
31
MC8
SOFTWARE
ASP Q:4217 , PHE Q:4230 , GLY Q:4260 , GLA Q:4270 , BGC Q:4272 , LYS S:4408 , THR S:4449 , HOH S:5253
BINDING SITE FOR RESIDUE GAL Q 4271
32
MC9
SOFTWARE
GAL Q:4271 , HOH Q:5266 , LYS S:4408 , THR S:4446
BINDING SITE FOR RESIDUE BGC Q 4272
33
NC1
SOFTWARE
ASN H:2315 , THR H:2321 , GLU H:2328 , PHE H:2330 , GLY H:2360 , GAL H:2371 , LYS P:4108
BINDING SITE FOR RESIDUE GLA H 2370
34
NC2
SOFTWARE
ASP H:2317 , THR H:2319 , PHE H:2330 , GLY H:2360 , GLA H:2370 , BGC H:2372 , LYS P:4108 , GLY P:4147
BINDING SITE FOR RESIDUE GAL H 2371
35
NC3
SOFTWARE
GAL H:2371 , THR P:4146
BINDING SITE FOR RESIDUE BGC H 2372
36
OC1
SOFTWARE
ASN S:4415 , THR S:4421 , GLU S:4428 , GLY S:4460 , GAL S:4471
BINDING SITE FOR RESIDUE GLA S 4470
37
OC2
SOFTWARE
ASP S:4417 , THR S:4419 , PHE S:4430 , GLY S:4460 , GLA S:4470 , BGC S:4472
BINDING SITE FOR RESIDUE GAL S 4471
38
OC3
SOFTWARE
THR E:1546 , GAL S:4471 , HOH S:5129
BINDING SITE FOR RESIDUE BGC S 4472
39
PC6
SOFTWARE
THR R:4321 , GLU R:4328 , GLY R:4360
BINDING SITE FOR RESIDUE GAL R 4370
40
PC7
SOFTWARE
LYS T:4513 , ASN T:4515 , THR T:4521 , GLU T:4528 , GLY T:4560 , HOH T:5269
BINDING SITE FOR RESIDUE GAL T 4570
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 20)
Info
All SCOP Domains
1a: SCOP_d1bosa_ (A:)
1b: SCOP_d1bosb_ (B:)
1c: SCOP_d1bosc_ (C:)
1d: SCOP_d1bosd_ (D:)
1e: SCOP_d1bose_ (E:)
1f: SCOP_d1bosf_ (F:)
1g: SCOP_d1bosg_ (G:)
1h: SCOP_d1bosh_ (H:)
1i: SCOP_d1bosi_ (I:)
1j: SCOP_d1bosj_ (J:)
1k: SCOP_d1bosk_ (K:)
1l: SCOP_d1bosl_ (L:)
1m: SCOP_d1bosm_ (M:)
1n: SCOP_d1bosn_ (N:)
1o: SCOP_d1boso_ (O:)
1p: SCOP_d1bosp_ (P:)
1q: SCOP_d1bosq_ (Q:)
1r: SCOP_d1bosr_ (R:)
1s: SCOP_d1boss_ (S:)
1t: SCOP_d1bost_ (T:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
OB-fold
(1179)
Superfamily
:
Bacterial enterotoxins
(188)
Family
:
Bacterial AB5 toxins, B-subunits
(85)
Protein domain
:
Verotoxin-1/shiga-toxin, B-pentamer
(19)
Escherichia coli [TaxId: 562]
(14)
1a
d1bosa_
A:
1b
d1bosb_
B:
1c
d1bosc_
C:
1d
d1bosd_
D:
1e
d1bose_
E:
1f
d1bosf_
F:
1g
d1bosg_
G:
1h
d1bosh_
H:
1i
d1bosi_
I:
1j
d1bosj_
J:
1k
d1bosk_
K:
1l
d1bosl_
L:
1m
d1bosm_
M:
1n
d1bosn_
N:
1o
d1boso_
O:
1p
d1bosp_
P:
1q
d1bosq_
Q:
1r
d1bosr_
R:
1s
d1boss_
S:
1t
d1bost_
T:
[
close SCOP info
]
CATH Domains
(1, 20)
Info
all CATH domains
1a: CATH_1bosA00 (A:1101-1169)
1b: CATH_1bosB00 (B:1201-1269)
1c: CATH_1bosK00 (K:3101-3169)
1d: CATH_1bosL00 (L:3201-3269)
1e: CATH_1bosM00 (M:3301-3369)
1f: CATH_1bosN00 (N:3401-3469)
1g: CATH_1bosO00 (O:3501-3569)
1h: CATH_1bosP00 (P:4101-4169)
1i: CATH_1bosQ00 (Q:4201-4269)
1j: CATH_1bosR00 (R:4301-4369)
1k: CATH_1bosS00 (S:4401-4469)
1l: CATH_1bosT00 (T:4501-4569)
1m: CATH_1bosC00 (C:1301-1369)
1n: CATH_1bosD00 (D:1401-1469)
1o: CATH_1bosE00 (E:1501-1569)
1p: CATH_1bosF00 (F:2101-2169)
1q: CATH_1bosG00 (G:2201-2269)
1r: CATH_1bosH00 (H:2301-2369)
1s: CATH_1bosI00 (I:2401-2469)
1t: CATH_1bosJ00 (J:2501-2569)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
OB fold (Dihydrolipoamide Acetyltransferase, E2P)
(1040)
Homologous Superfamily
:
[code=2.40.50.70, no name defined]
(18)
, (Phage h30, enterobacteria phage h-19b)
(2)
1a
1bosA00
A:1101-1169
1b
1bosB00
B:1201-1269
1c
1bosK00
K:3101-3169
1d
1bosL00
L:3201-3269
1e
1bosM00
M:3301-3369
1f
1bosN00
N:3401-3469
1g
1bosO00
O:3501-3569
1h
1bosP00
P:4101-4169
1i
1bosQ00
Q:4201-4269
1j
1bosR00
R:4301-4369
1k
1bosS00
S:4401-4469
1l
1bosT00
T:4501-4569
1m
1bosC00
C:1301-1369
1n
1bosD00
D:1401-1469
1o
1bosE00
E:1501-1569
1p
1bosF00
F:2101-2169
1q
1bosG00
G:2201-2269
1r
1bosH00
H:2301-2369
1s
1bosI00
I:2401-2469
1t
1bosJ00
J:2501-2569
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain P
Chain Q
Chain R
Chain S
Chain T
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (281 KB)
Header - Asym.Unit
Biol.Unit 1 (74 KB)
Header - Biol.Unit 1
Biol.Unit 2 (73 KB)
Header - Biol.Unit 2
Biol.Unit 3 (74 KB)
Header - Biol.Unit 3
Biol.Unit 4 (73 KB)
Header - Biol.Unit 4
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
1BOS
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help