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1BOS
Biol. Unit 3
Info
Asym.Unit (281 KB)
Biol.Unit 1 (74 KB)
Biol.Unit 2 (73 KB)
Biol.Unit 3 (74 KB)
Biol.Unit 4 (73 KB)
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(1)
Title
:
SHIGA-LIKE TOXIN COMPLEXED WITH ITS RECEPTOR
Authors
:
H. Ling, A. Boodhoo, B. Hazes, M. D. Cummings, G. D. Armstrong, J. L. Brunton, R. J. Read
Date
:
13 Jan 98 (Deposition) - 02 Feb 99 (Release) - 21 Jul 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T
Biol. Unit 1: A,B,C,D,E (1x)
Biol. Unit 2: F,G,H,I,J (1x)
Biol. Unit 3: K,L,M,N,O (1x)
Biol. Unit 4: P,Q,R,S,T (1x)
Keywords
:
Toxin, Receptor Binding, Protein-Carbohydrate Recognition, Ob-Fold
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Ling, A. Boodhoo, B. Hazes, M. D. Cummings, G. D. Armstrong, J. L. Brunton, R. J. Read
Structure Of The Shiga-Like Toxin I B-Pentamer Complexed With An Analogue Of Its Receptor Gb3.
Biochemistry V. 37 1777 1998
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(3, 34)
Info
All Hetero Components
1a: BETA-D-GLUCOSE (BGCa)
1aa: BETA-D-GLUCOSE (BGCaa)
1ab: BETA-D-GLUCOSE (BGCab)
1ac: BETA-D-GLUCOSE (BGCac)
1ad: BETA-D-GLUCOSE (BGCad)
1ae: BETA-D-GLUCOSE (BGCae)
1af: BETA-D-GLUCOSE (BGCaf)
1ag: BETA-D-GLUCOSE (BGCag)
1b: BETA-D-GLUCOSE (BGCb)
1c: BETA-D-GLUCOSE (BGCc)
1d: BETA-D-GLUCOSE (BGCd)
1e: BETA-D-GLUCOSE (BGCe)
1f: BETA-D-GLUCOSE (BGCf)
1g: BETA-D-GLUCOSE (BGCg)
1h: BETA-D-GLUCOSE (BGCh)
1i: BETA-D-GLUCOSE (BGCi)
1j: BETA-D-GLUCOSE (BGCj)
1k: BETA-D-GLUCOSE (BGCk)
1l: BETA-D-GLUCOSE (BGCl)
1m: BETA-D-GLUCOSE (BGCm)
1n: BETA-D-GLUCOSE (BGCn)
1o: BETA-D-GLUCOSE (BGCo)
1p: BETA-D-GLUCOSE (BGCp)
1q: BETA-D-GLUCOSE (BGCq)
1r: BETA-D-GLUCOSE (BGCr)
1s: BETA-D-GLUCOSE (BGCs)
1t: BETA-D-GLUCOSE (BGCt)
1u: BETA-D-GLUCOSE (BGCu)
1v: BETA-D-GLUCOSE (BGCv)
1w: BETA-D-GLUCOSE (BGCw)
1x: BETA-D-GLUCOSE (BGCx)
1y: BETA-D-GLUCOSE (BGCy)
1z: BETA-D-GLUCOSE (BGCz)
2a: BETA-D-GALACTOSE (GALa)
2aa: BETA-D-GALACTOSE (GALaa)
2ab: BETA-D-GALACTOSE (GALab)
2ac: BETA-D-GALACTOSE (GALac)
2ad: BETA-D-GALACTOSE (GALad)
2ae: BETA-D-GALACTOSE (GALae)
2af: BETA-D-GALACTOSE (GALaf)
2ag: BETA-D-GALACTOSE (GALag)
2ah: BETA-D-GALACTOSE (GALah)
2ai: BETA-D-GALACTOSE (GALai)
2aj: BETA-D-GALACTOSE (GALaj)
2ak: BETA-D-GALACTOSE (GALak)
2al: BETA-D-GALACTOSE (GALal)
2am: BETA-D-GALACTOSE (GALam)
2an: BETA-D-GALACTOSE (GALan)
2ao: BETA-D-GALACTOSE (GALao)
2ap: BETA-D-GALACTOSE (GALap)
2aq: BETA-D-GALACTOSE (GALaq)
2ar: BETA-D-GALACTOSE (GALar)
2as: BETA-D-GALACTOSE (GALas)
2at: BETA-D-GALACTOSE (GALat)
2au: BETA-D-GALACTOSE (GALau)
2av: BETA-D-GALACTOSE (GALav)
2aw: BETA-D-GALACTOSE (GALaw)
2ax: BETA-D-GALACTOSE (GALax)
2ay: BETA-D-GALACTOSE (GALay)
2az: BETA-D-GALACTOSE (GALaz)
2b: BETA-D-GALACTOSE (GALb)
2ba: BETA-D-GALACTOSE (GALba)
2bb: BETA-D-GALACTOSE (GALbb)
2bc: BETA-D-GALACTOSE (GALbc)
2bd: BETA-D-GALACTOSE (GALbd)
2be: BETA-D-GALACTOSE (GALbe)
2bf: BETA-D-GALACTOSE (GALbf)
2bg: BETA-D-GALACTOSE (GALbg)
2bh: BETA-D-GALACTOSE (GALbh)
2c: BETA-D-GALACTOSE (GALc)
2d: BETA-D-GALACTOSE (GALd)
2e: BETA-D-GALACTOSE (GALe)
2f: BETA-D-GALACTOSE (GALf)
2g: BETA-D-GALACTOSE (GALg)
2h: BETA-D-GALACTOSE (GALh)
2i: BETA-D-GALACTOSE (GALi)
2j: BETA-D-GALACTOSE (GALj)
2k: BETA-D-GALACTOSE (GALk)
2l: BETA-D-GALACTOSE (GALl)
2m: BETA-D-GALACTOSE (GALm)
2n: BETA-D-GALACTOSE (GALn)
2o: BETA-D-GALACTOSE (GALo)
2p: BETA-D-GALACTOSE (GALp)
2q: BETA-D-GALACTOSE (GALq)
2r: BETA-D-GALACTOSE (GALr)
2s: BETA-D-GALACTOSE (GALs)
2t: BETA-D-GALACTOSE (GALt)
2u: BETA-D-GALACTOSE (GALu)
2v: BETA-D-GALACTOSE (GALv)
2w: BETA-D-GALACTOSE (GALw)
2x: BETA-D-GALACTOSE (GALx)
2y: BETA-D-GALACTOSE (GALy)
2z: BETA-D-GALACTOSE (GALz)
3a: ALPHA D-GALACTOSE (GLAa)
3aa: ALPHA D-GALACTOSE (GLAaa)
3ab: ALPHA D-GALACTOSE (GLAab)
3ac: ALPHA D-GALACTOSE (GLAac)
3ad: ALPHA D-GALACTOSE (GLAad)
3ae: ALPHA D-GALACTOSE (GLAae)
3af: ALPHA D-GALACTOSE (GLAaf)
3ag: ALPHA D-GALACTOSE (GLAag)
3ah: ALPHA D-GALACTOSE (GLAah)
3ai: ALPHA D-GALACTOSE (GLAai)
3aj: ALPHA D-GALACTOSE (GLAaj)
3ak: ALPHA D-GALACTOSE (GLAak)
3al: ALPHA D-GALACTOSE (GLAal)
3am: ALPHA D-GALACTOSE (GLAam)
3an: ALPHA D-GALACTOSE (GLAan)
3ao: ALPHA D-GALACTOSE (GLAao)
3ap: ALPHA D-GALACTOSE (GLAap)
3aq: ALPHA D-GALACTOSE (GLAaq)
3ar: ALPHA D-GALACTOSE (GLAar)
3as: ALPHA D-GALACTOSE (GLAas)
3at: ALPHA D-GALACTOSE (GLAat)
3au: ALPHA D-GALACTOSE (GLAau)
3av: ALPHA D-GALACTOSE (GLAav)
3aw: ALPHA D-GALACTOSE (GLAaw)
3b: ALPHA D-GALACTOSE (GLAb)
3c: ALPHA D-GALACTOSE (GLAc)
3d: ALPHA D-GALACTOSE (GLAd)
3e: ALPHA D-GALACTOSE (GLAe)
3f: ALPHA D-GALACTOSE (GLAf)
3g: ALPHA D-GALACTOSE (GLAg)
3h: ALPHA D-GALACTOSE (GLAh)
3i: ALPHA D-GALACTOSE (GLAi)
3j: ALPHA D-GALACTOSE (GLAj)
3k: ALPHA D-GALACTOSE (GLAk)
3l: ALPHA D-GALACTOSE (GLAl)
3m: ALPHA D-GALACTOSE (GLAm)
3n: ALPHA D-GALACTOSE (GLAn)
3o: ALPHA D-GALACTOSE (GLAo)
3p: ALPHA D-GALACTOSE (GLAp)
3q: ALPHA D-GALACTOSE (GLAq)
3r: ALPHA D-GALACTOSE (GLAr)
3s: ALPHA D-GALACTOSE (GLAs)
3t: ALPHA D-GALACTOSE (GLAt)
3u: ALPHA D-GALACTOSE (GLAu)
3v: ALPHA D-GALACTOSE (GLAv)
3w: ALPHA D-GALACTOSE (GLAw)
3x: ALPHA D-GALACTOSE (GLAx)
3y: ALPHA D-GALACTOSE (GLAy)
3z: ALPHA D-GALACTOSE (GLAz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BGC
7
Ligand/Ion
BETA-D-GLUCOSE
2
GAL
15
Ligand/Ion
BETA-D-GALACTOSE
3
GLA
12
Ligand/Ion
ALPHA D-GALACTOSE
[
close Hetero Component info
]
Sites
(37, 37)
Info
All Sites
01: AC7 (SOFTWARE)
02: AC8 (SOFTWARE)
03: AC9 (SOFTWARE)
04: CC1 (SOFTWARE)
05: CC2 (SOFTWARE)
06: CC3 (SOFTWARE)
07: DC4 (SOFTWARE)
08: DC5 (SOFTWARE)
09: DC6 (SOFTWARE)
10: EC7 (SOFTWARE)
11: EC8 (SOFTWARE)
12: EC9 (SOFTWARE)
13: GC1 (SOFTWARE)
14: GC2 (SOFTWARE)
15: GC3 (SOFTWARE)
16: HC3 (SOFTWARE)
17: HC4 (SOFTWARE)
18: IC2 (SOFTWARE)
19: IC3 (SOFTWARE)
20: JC2 (SOFTWARE)
21: JC3 (SOFTWARE)
22: KC2 (SOFTWARE)
23: KC3 (SOFTWARE)
24: LC3 (SOFTWARE)
25: LC4 (SOFTWARE)
26: NC4 (SOFTWARE)
27: NC5 (SOFTWARE)
28: NC6 (SOFTWARE)
29: NC7 (SOFTWARE)
30: NC8 (SOFTWARE)
31: NC9 (SOFTWARE)
32: OC4 (SOFTWARE)
33: OC5 (SOFTWARE)
34: OC6 (SOFTWARE)
35: PC3 (SOFTWARE)
36: PC4 (SOFTWARE)
37: PC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC7
SOFTWARE
THR K:3131 , ASN K:3132 , ARG K:3133 , PHE K:3163 , GAL K:3191 , HOH K:5090 , HOH K:5091 , ASP L:3216
BINDING SITE FOR RESIDUE GLA K 3190
02
AC8
SOFTWARE
THR K:3154 , ASN K:3155 , GLY K:3162 , GLA K:3190 , BGC K:3192 , HOH K:5054
BINDING SITE FOR RESIDUE GAL K 3191
03
AC9
SOFTWARE
GAL K:3191 , HOH K:5054
BINDING SITE FOR RESIDUE BGC K 3192
04
CC1
SOFTWARE
THR L:3231 , ASN L:3232 , ARG L:3233 , PHE L:3263 , GAL L:3291 , HOH L:5056 , ASP M:3316
BINDING SITE FOR RESIDUE GLA L 3290
05
CC2
SOFTWARE
THR L:3201 , THR L:3254 , ASN L:3255 , GLY L:3262 , GLA L:3290 , BGC L:3292 , HOH L:5056 , HOH L:5265
BINDING SITE FOR RESIDUE GAL L 3291
06
CC3
SOFTWARE
ASN L:3255 , GAL L:3291 , HOH L:5056 , HOH L:5263
BINDING SITE FOR RESIDUE BGC L 3292
07
DC4
SOFTWARE
THR M:3331 , ASN M:3332 , ARG M:3333 , PHE M:3363 , GAL M:3391 , HOH M:5189 , ASP N:3416
BINDING SITE FOR RESIDUE GLA M 3390
08
DC5
SOFTWARE
THR M:3301 , THR M:3354 , ASN M:3355 , GLY M:3362 , GLA M:3390 , BGC M:3392
BINDING SITE FOR RESIDUE GAL M 3391
09
DC6
SOFTWARE
GAL M:3391
BINDING SITE FOR RESIDUE BGC M 3392
10
EC7
SOFTWARE
THR N:3431 , ASN N:3432 , ARG N:3433 , GLY N:3462 , PHE N:3463 , GAL N:3491 , HOH N:5165 , ASP O:3516
BINDING SITE FOR RESIDUE GLA N 3490
11
EC8
SOFTWARE
THR N:3454 , ASN N:3455 , GLY N:3462 , GLA N:3490 , BGC N:3492 , HOH N:5046 , HOH N:5165
BINDING SITE FOR RESIDUE GAL N 3491
12
EC9
SOFTWARE
GAL N:3491
BINDING SITE FOR RESIDUE BGC N 3492
13
GC1
SOFTWARE
ASP K:3116 , THR O:3531 , ASN O:3532 , ARG O:3533 , GLY O:3562 , PHE O:3563 , GAL O:3591
BINDING SITE FOR RESIDUE GLA O 3590
14
GC2
SOFTWARE
THR O:3554 , ASN O:3555 , GLY O:3562 , GLA O:3590 , BGC O:3592 , HOH O:5108 , HOH O:5162
BINDING SITE FOR RESIDUE GAL O 3591
15
GC3
SOFTWARE
GAL O:3591 , HOH O:5108
BINDING SITE FOR RESIDUE BGC O 3592
16
HC3
SOFTWARE
ARG K:3133 , TRP K:3134 , ASN K:3135 , GAL K:3181 , ASP L:3218
BINDING SITE FOR RESIDUE GLA K 3180
17
HC4
SOFTWARE
TRP K:3134 , GLA K:3180
BINDING SITE FOR RESIDUE GAL K 3181
18
IC2
SOFTWARE
ARG L:3233 , TRP L:3234 , ASN L:3235 , GAL L:3281 , ASP M:3318
BINDING SITE FOR RESIDUE GLA L 3280
19
IC3
SOFTWARE
TRP L:3234 , GLA L:3280 , HOH L:5150 , HOH L:5151
BINDING SITE FOR RESIDUE GAL L 3281
20
JC2
SOFTWARE
ASN M:3332 , ARG M:3333 , TRP M:3334 , ASN M:3335 , GAL M:3381 , TYR N:3414 , ASP N:3418
BINDING SITE FOR RESIDUE GLA M 3380
21
JC3
SOFTWARE
TRP M:3334 , GLA M:3380 , HOH M:5279 , HOH M:5306
BINDING SITE FOR RESIDUE GAL M 3381
22
KC2
SOFTWARE
ARG N:3433 , TRP N:3434 , ASN N:3435 , GAL N:3481 , ASP O:3518
BINDING SITE FOR RESIDUE GLA N 3480
23
KC3
SOFTWARE
GLA N:3480 , HOH N:5143 , HOH N:5239
BINDING SITE FOR RESIDUE GAL N 3481
24
LC3
SOFTWARE
TYR K:3114 , ASP K:3118 , ASN O:3532 , ARG O:3533 , TRP O:3534 , ASN O:3535 , GAL O:3581
BINDING SITE FOR RESIDUE GLA O 3580
25
LC4
SOFTWARE
TRP O:3534 , GLA O:3580 , HOH O:5142 , HOH O:5274
BINDING SITE FOR RESIDUE GAL O 3581
26
NC4
SOFTWARE
LYS F:2108 , THR M:3321 , GLU M:3328 , PHE M:3330 , GLY M:3360 , GAL M:3371 , HOH M:5342
BINDING SITE FOR RESIDUE GLA M 3370
27
NC5
SOFTWARE
HOH F:5170 , ASP M:3317 , PHE M:3330 , GLY M:3360 , GLA M:3370 , BGC M:3372
BINDING SITE FOR RESIDUE GAL M 3371
28
NC6
SOFTWARE
HOH F:5170 , ILE G:2245 , GAL M:3371 , HOH M:5106 , HOH M:5159
BINDING SITE FOR RESIDUE BGC M 3372
29
NC7
SOFTWARE
ASN D:1415 , THR D:1421 , GLU D:1428 , PHE D:1430 , GLY D:1460 , GAL D:1471 , LYS O:3508
BINDING SITE FOR RESIDUE GLA D 1470
30
NC8
SOFTWARE
ASP D:1417 , THR D:1419 , PHE D:1430 , GLY D:1460 , GLA D:1470 , BGC D:1472 , HOH O:5235
BINDING SITE FOR RESIDUE GAL D 1471
31
NC9
SOFTWARE
GAL D:1471 , ILE K:3145
BINDING SITE FOR RESIDUE BGC D 1472
32
OC4
SOFTWARE
ASN O:3515 , THR O:3521 , GLU O:3528 , PHE O:3530 , GLY O:3560 , GAL O:3571 , HOH O:5109 , HOH O:5282
BINDING SITE FOR RESIDUE GLA O 3570
33
OC5
SOFTWARE
LYS L:3208 , THR L:3249 , HOH L:5044 , HOH L:5164 , ASP O:3517 , PHE O:3530 , GLY O:3560 , GLA O:3570 , BGC O:3572 , HOH O:5204
BINDING SITE FOR RESIDUE GAL O 3571
34
OC6
SOFTWARE
LYS L:3208 , THR L:3246 , GAL O:3571
BINDING SITE FOR RESIDUE BGC O 3572
35
PC3
SOFTWARE
ASN K:3115 , THR K:3119 , THR K:3121 , GLU K:3128 , PHE K:3130 , GLY K:3160 , HOH K:5148 , HOH K:5294
BINDING SITE FOR RESIDUE GAL K 3170
36
PC4
SOFTWARE
LYS L:3213 , ASN L:3215 , THR L:3221 , GLU L:3228 , PHE L:3230 , GLY L:3260 , HOH L:5203
BINDING SITE FOR RESIDUE GAL L 3270
37
PC5
SOFTWARE
LYS N:3413 , ASN N:3415 , THR N:3421 , GLU N:3428 , GLY N:3460 , HOH N:5188 , HOH N:5276
BINDING SITE FOR RESIDUE GAL N 3470
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 20)
Info
All SCOP Domains
1a: SCOP_d1bosa_ (A:)
1b: SCOP_d1bosb_ (B:)
1c: SCOP_d1bosc_ (C:)
1d: SCOP_d1bosd_ (D:)
1e: SCOP_d1bose_ (E:)
1f: SCOP_d1bosf_ (F:)
1g: SCOP_d1bosg_ (G:)
1h: SCOP_d1bosh_ (H:)
1i: SCOP_d1bosi_ (I:)
1j: SCOP_d1bosj_ (J:)
1k: SCOP_d1bosk_ (K:)
1l: SCOP_d1bosl_ (L:)
1m: SCOP_d1bosm_ (M:)
1n: SCOP_d1bosn_ (N:)
1o: SCOP_d1boso_ (O:)
1p: SCOP_d1bosp_ (P:)
1q: SCOP_d1bosq_ (Q:)
1r: SCOP_d1bosr_ (R:)
1s: SCOP_d1boss_ (S:)
1t: SCOP_d1bost_ (T:)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
OB-fold
(1179)
Superfamily
:
Bacterial enterotoxins
(188)
Family
:
Bacterial AB5 toxins, B-subunits
(85)
Protein domain
:
Verotoxin-1/shiga-toxin, B-pentamer
(19)
Escherichia coli [TaxId: 562]
(14)
1a
d1bosa_
A:
1b
d1bosb_
B:
1c
d1bosc_
C:
1d
d1bosd_
D:
1e
d1bose_
E:
1f
d1bosf_
F:
1g
d1bosg_
G:
1h
d1bosh_
H:
1i
d1bosi_
I:
1j
d1bosj_
J:
1k
d1bosk_
K:
1l
d1bosl_
L:
1m
d1bosm_
M:
1n
d1bosn_
N:
1o
d1boso_
O:
1p
d1bosp_
P:
1q
d1bosq_
Q:
1r
d1bosr_
R:
1s
d1boss_
S:
1t
d1bost_
T:
[
close SCOP info
]
CATH Domains
(1, 20)
Info
all CATH domains
1a: CATH_1bosA00 (A:1101-1169)
1b: CATH_1bosB00 (B:1201-1269)
1c: CATH_1bosK00 (K:3101-3169)
1d: CATH_1bosL00 (L:3201-3269)
1e: CATH_1bosM00 (M:3301-3369)
1f: CATH_1bosN00 (N:3401-3469)
1g: CATH_1bosO00 (O:3501-3569)
1h: CATH_1bosP00 (P:4101-4169)
1i: CATH_1bosQ00 (Q:4201-4269)
1j: CATH_1bosR00 (R:4301-4369)
1k: CATH_1bosS00 (S:4401-4469)
1l: CATH_1bosT00 (T:4501-4569)
1m: CATH_1bosC00 (C:1301-1369)
1n: CATH_1bosD00 (D:1401-1469)
1o: CATH_1bosE00 (E:1501-1569)
1p: CATH_1bosF00 (F:2101-2169)
1q: CATH_1bosG00 (G:2201-2269)
1r: CATH_1bosH00 (H:2301-2369)
1s: CATH_1bosI00 (I:2401-2469)
1t: CATH_1bosJ00 (J:2501-2569)
View:
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Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
OB fold (Dihydrolipoamide Acetyltransferase, E2P)
(1040)
Homologous Superfamily
:
[code=2.40.50.70, no name defined]
(18)
, (Phage h30, enterobacteria phage h-19b)
(2)
1a
1bosA00
A:1101-1169
1b
1bosB00
B:1201-1269
1c
1bosK00
K:3101-3169
1d
1bosL00
L:3201-3269
1e
1bosM00
M:3301-3369
1f
1bosN00
N:3401-3469
1g
1bosO00
O:3501-3569
1h
1bosP00
P:4101-4169
1i
1bosQ00
Q:4201-4269
1j
1bosR00
R:4301-4369
1k
1bosS00
S:4401-4469
1l
1bosT00
T:4501-4569
1m
1bosC00
C:1301-1369
1n
1bosD00
D:1401-1469
1o
1bosE00
E:1501-1569
1p
1bosF00
F:2101-2169
1q
1bosG00
G:2201-2269
1r
1bosH00
H:2301-2369
1s
1bosI00
I:2401-2469
1t
1bosJ00
J:2501-2569
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Asymmetric Unit 1
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