PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
1BO9
Asym. Unit
Info
Asym.Unit (412 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
Models
(21 )
Title
:
NMR SOLUTION STRUCTURE OF DOMAIN 1 OF HUMAN ANNEXIN I
Authors
:
J. Gao, H. Yan Li
Date
:
10 Aug 98 (Deposition) - 19 Aug 98 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (21 x)
Keywords
:
Domain 1, Metal Transport
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Gao, Y. Li, H. Yan
Nmr Solution Structure Of Domain 1 Of Human Annexin I Shows An Autonomous Folding Unit.
J. Biol. Chem. V. 274 2971 1999
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(0, 0)
Info
All Hetero Components
View:
Select:
Label:
Sorry, no Info available
[
close Hetero component info
]
Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: ANNEXIN (A:19-71|-|-|-)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ANNEXIN
PS00223
Annexins repeated domain signature.
ANXA1_HUMAN
59-111
131-183
215-267
290-342
1
A:19-71
-
-
-
[
close PROSITE info
]
Exons
(3, 3)
Info
All Exons
Exon 1.4 (A:1-19)
Exon 1.5a (A:19-50)
Exon 1.6b (A:51-73)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.3a/1.4
2: Boundary 1.4/1.5a
3: Boundary 1.5a/1.6b
4: Boundary 1.6b/1.7
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.3a
ENST00000376911
3a
ENSE00001472097
chr9:
75772570-75773517
948
ANXA1_HUMAN
1-22
22
0
-
-
1.4
ENST00000376911
4
ENSE00000706565
chr9:
75773611-75773719
109
ANXA1_HUMAN
23-59
37
1
A:1-19
19
1.5a
ENST00000376911
5a
ENSE00000706585
chr9:
75774245-75774339
95
ANXA1_HUMAN
59-90
32
1
A:19-50
32
1.6b
ENST00000376911
6b
ENSE00000706597
chr9:
75775179-75775292
114
ANXA1_HUMAN
91-128
38
1
A:51-73
23
1.7
ENST00000376911
7
ENSE00000706613
chr9:
75775719-75775809
91
ANXA1_HUMAN
129-159
31
0
-
-
1.8
ENST00000376911
8
ENSE00000706617
chr9:
75777698-75777777
80
ANXA1_HUMAN
159-185
27
0
-
-
1.9b
ENST00000376911
9b
ENSE00002174385
chr9:
75778392-75778448
57
ANXA1_HUMAN
186-204
19
0
-
-
1.10a
ENST00000376911
10a
ENSE00001676087
chr9:
75780032-75780125
94
ANXA1_HUMAN
205-236
32
0
-
-
1.11
ENST00000376911
11
ENSE00001652613
chr9:
75781013-75781108
96
ANXA1_HUMAN
236-268
33
0
-
-
1.12a
ENST00000376911
12a
ENSE00001628663
chr9:
75782413-75782471
59
ANXA1_HUMAN
268-287
20
0
-
-
1.13b
ENST00000376911
13b
ENSE00001650954
chr9:
75783948-75784070
123
ANXA1_HUMAN
288-328
41
0
-
-
1.14b
ENST00000376911
14b
ENSE00001128335
chr9:
75784967-75785309
343
ANXA1_HUMAN
329-346
18
0
-
-
[
close EXON info
]
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1bo9a_ (A:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Annexin
(61)
Superfamily
:
Annexin
(61)
Family
:
Annexin
(56)
Protein domain
:
Annexin I
(4)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d1bo9a_
A:
[
close SCOP info
]
CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1bo9A00 (A:1-73)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Annexin V; domain 1
(80)
Homologous Superfamily
:
[code=1.10.220.10, no name defined]
(58)
Human (Homo sapiens)
(22)
1a
1bo9A00
A:1-73
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (412 KB)
Header - Asym.Unit
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
1BO9
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help