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Getting 'Biological Unit' information from database.
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Getting 'Hetero Component' information from database.
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Getting 'Exon' information from database.
1BJ4
Asym. Unit
Info
Asym.Unit (80 KB)
Biol.Unit 1 (77 KB)
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(1)
Title
:
RECOMBINANT SERINE HYDROXYMETHYLTRANSFERASE (HUMAN)
Authors
:
S. B. Renwick, K. Snell
Date
:
02 Jul 98 (Deposition) - 16 Aug 99 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.65
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Transferase, Metabolic Role, Pyridoxal 5'-Phosphate
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. B. Renwick, K. Snell, U. Baumann
The Crystal Structure Of Human Cytosolic Serine Hydroxymethyltransferase: A Target For Cancer Chemotherapy
Structure V. 6 1105 1998
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: PYRIDOXAL-5'-PHOSPHATE (PLPa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
PLP
1
Ligand/Ion
PYRIDOXAL-5'-PHOSPHATE
[
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]
Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: PLP (AUTHOR)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TYR A:73 , SER A:119 , GLY A:120 , SER A:121 , HIS A:148 , THR A:202 , ASP A:228 , ALA A:230 , HIS A:231 , THR A:254 , HIS A:256 , LYS A:257 , GLY A:302 , GLY A:303
BINDING SITE FOR RESIDUE PLP A 500
2
PLP
AUTHOR
LYS A:257
PLP, PYRIDOXAL-5'-PHOSPHATE BOUND AS SCHIFF BASE TO LYS257
[
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SAPs(SNPs)/Variants
(2, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_059795 (E340Q, chain A, )
2: VAR_022010 (L474F, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_059795
E
340
Q
GLYC_HUMAN
Polymorphism
7215148
A
E
340
Q
2
UniProt
VAR_022010
L
474
F
GLYC_HUMAN
Polymorphism
1979277
A
L
474
F
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: SHMT (A:249-265)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SHMT
PS00096
Serine hydroxymethyltransferase pyridoxal-phosphate attachment site.
GLYC_HUMAN
249-265
1
A:249-265
[
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Exons
(11, 11)
Info
All Exons
Exon 1.2 (A:11-32)
Exon 1.3a (A:33-81)
Exon 1.8b (A:81-120)
Exon 1.9 (A:120-173)
Exon 1.10b (A:174-201)
Exon 1.11 (A:201-272)
Exon 1.12 (A:272-311)
Exon 1.13 (A:311-352)
Exon 1.14 (A:352-391)
Exon 1.15 (A:391-428)
Exon 1.16d (A:428-480)
View:
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All Exon Boundaries
01: Boundary 1.1c/1.2
02: Boundary 1.2/1.3a
03: Boundary 1.3a/1.8b
04: Boundary 1.8b/1.9
05: Boundary 1.9/1.10b
06: Boundary 1.10b/1.11
07: Boundary 1.11/1.12
08: Boundary 1.12/1.13
09: Boundary 1.13/1.14
10: Boundary 1.14/1.15
11: Boundary 1.15/1.16d
12: Boundary 1.16d/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1c
ENST00000316694
1c
ENSE00001912602
chr17:
18266801-18266686
116
GLYC_HUMAN
-
0
0
-
-
1.2
ENST00000316694
2
ENSE00001337167
chr17:
18259314-18259200
115
GLYC_HUMAN
1-32
32
1
A:11-32
22
1.3a
ENST00000316694
3a
ENSE00001291942
chr17:
18257131-18256986
146
GLYC_HUMAN
33-81
49
1
A:33-81
49
1.8b
ENST00000316694
8b
ENSE00001313994
chr17:
18251754-18251639
116
GLYC_HUMAN
81-120
40
1
A:81-120
40
1.9
ENST00000316694
9
ENSE00001323233
chr17:
18250970-18250810
161
GLYC_HUMAN
120-173
54
1
A:120-173
54
1.10b
ENST00000316694
10b
ENSE00001294491
chr17:
18244127-18244046
82
GLYC_HUMAN
174-201
28
1
A:174-201
28
1.11
ENST00000316694
11
ENSE00001703879
chr17:
18243569-18243357
213
GLYC_HUMAN
201-272
72
1
A:201-272
72
1.12
ENST00000316694
12
ENSE00001305676
chr17:
18238989-18238873
117
GLYC_HUMAN
272-311
40
1
A:272-311
40
1.13
ENST00000316694
13
ENSE00001326097
chr17:
18236602-18236480
123
GLYC_HUMAN
311-352
42
1
A:311-352
42
1.14
ENST00000316694
14
ENSE00001275569
chr17:
18233985-18233869
117
GLYC_HUMAN
352-391
40
1
A:352-391
40
1.15
ENST00000316694
15
ENSE00001275563
chr17:
18232702-18232592
111
GLYC_HUMAN
391-428
38
1
A:391-428
38
1.16d
ENST00000316694
16d
ENSE00001522479
chr17:
18232233-18231187
1047
GLYC_HUMAN
428-483
56
1
A:428-480
53
[
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1bj4a_ (A:)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
PLP-dependent transferase-like
(627)
Superfamily
:
PLP-dependent transferases
(625)
Family
:
GABA-aminotransferase-like
(167)
Protein domain
:
Serine hydroxymethyltransferase
(50)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d1bj4a_
A:
[
close SCOP info
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CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_1bj4A01 (A:58-320)
2a: CATH_1bj4A02 (A:321-480)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Aspartate Aminotransferase; domain 2
(384)
Homologous Superfamily
:
Type I PLP-dependent aspartate aminotransferase-like (Major domain)
(384)
Human (Homo sapiens)
(18)
1a
1bj4A01
A:58-320
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Aspartate Aminotransferase, domain 1
(355)
Homologous Superfamily
:
Aspartate Aminotransferase, domain 1
(354)
Human (Homo sapiens)
(15)
2a
1bj4A02
A:321-480
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Chain A
Asymmetric Unit 1
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