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1BHT
Biol. Unit 1
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Asym.Unit (70 KB)
Biol.Unit 1 (65 KB)
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(1)
Title
:
NK1 FRAGMENT OF HUMAN HEPATOCYTE GROWTH FACTOR
Authors
:
M. H. Ultsch, N. A. Lokker, P. J. Godowski, A. M. De Vos
Date
:
10 Jun 98 (Deposition) - 04 Nov 98 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Heparin-Binding Domain, Kringle, C-Met Receptor Angonist/ Antagonist, Growth Factor
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Ultsch, N. A. Lokker, P. J. Godowski, A. M. De Vos
Crystal Structure Of The Nk1 Fragment Of Human Hepatocyte Growth Factor At 2. 0 A Resolution.
Structure V. 6 1383 1998
(for further references see the
PDB file header
)
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Hetero Components
(2, 5)
Info
All Hetero Components
1a: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEa)
1b: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEb)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
View:
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No.
Name
Count
Type
Full Name
1
EPE
2
Ligand/Ion
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
2
SO4
3
Ligand/Ion
SULFATE ION
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LYS A:60 , LYS A:62 , ARG A:73 , ARG A:181 , HOH A:832
BINDING SITE FOR RESIDUE SO4 A 5
2
AC2
SOFTWARE
ARG B:468 , GLY B:469 , ASP B:471 , GLN B:473 , HOH B:624 , HOH B:699 , HOH B:887
BINDING SITE FOR RESIDUE SO4 B 6
3
AC3
SOFTWARE
ARG A:168 , GLY A:169 , LYS A:170 , ASP A:171 , HOH A:682 , HOH A:727
BINDING SITE FOR RESIDUE SO4 A 7
4
AC4
SOFTWARE
GLU A:183 , GLU A:184 , GLY A:185 , GLY A:186 , TRP A:188 , PHE A:190 , ARG A:197 , TYR A:198 , VAL A:200 , HOH A:710 , HOH A:724
BINDING SITE FOR RESIDUE EPE A 1
5
AC5
SOFTWARE
SER B:461 , GLU B:483 , GLU B:484 , GLY B:485 , GLY B:486 , TRP B:488 , PHE B:490 , ARG B:497 , HOH B:603 , HOH B:717
BINDING SITE FOR RESIDUE EPE B 2
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SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_014570 (S453I, chain A/A/B, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_014570
S
153
I
HGF_HUMAN
Polymorphism
17566
A
A/B
S
153
453
I
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(3, 7)
Info
All PROSITE Patterns/Profiles
1: PAN (A:37-123,B:337-423)
2: KRINGLE_2 (A:127-206,A:210-210|-|-)
3: KRINGLE_1 (A:176-189,B:476-489|-|-|-)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PAN
PS50948
PAN/Apple domain profile.
HGF_HUMAN
37-123
2
A:37-123
B:337-423
2
KRINGLE_2
PS50070
Kringle domain profile.
HGF_HUMAN
127-206
210-288
304-383
390-469
3
A:127-206
B:427-506
A:210-210
-
-
3
KRINGLE_1
PS00021
Kringle domain signature.
HGF_HUMAN
176-189
259-271
353-365
439-452
2
A:176-189
B:476-489
-
-
-
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1bhta1 (A:35-126)
1b: SCOP_d1bhtb1 (B:336-426)
2a: SCOP_d1bhta2 (A:127-210)
2b: SCOP_d1bhtb2 (B:427-509)
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Protein Domains
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Class
:
Small proteins
(3458)
Fold
:
Hairpin loop containing domain-like
(17)
Superfamily
:
Hairpin loop containing domain-like
(17)
Family
:
Hairpin loop containing domain
(15)
Protein domain
:
Hepatocyte growth factor
(11)
Human (Homo sapiens) [TaxId: 9606]
(11)
1a
d1bhta1
A:35-126
1b
d1bhtb1
B:336-426
Fold
:
Kringle-like
(68)
Superfamily
:
Kringle-like
(68)
Family
:
Kringle modules
(54)
Protein domain
:
NK1 fragment of hepatocyte growth factor
(8)
Human (Homo sapiens) [TaxId: 9606]
(8)
2a
d1bhta2
A:127-210
2b
d1bhtb2
B:427-509
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1bhtB01 (B:336-425)
1b: CATH_1bhtA01 (A:35-125)
2a: CATH_1bhtB02 (B:426-509)
2b: CATH_1bhtA02 (A:126-210)
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Organisms
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(bba) Sandwich
(528)
Topology
:
Hepatocyte Growth Factor
(13)
Homologous Superfamily
:
Hepatocyte Growth Factor
(13)
Human (Homo sapiens)
(9)
1a
1bhtB01
B:336-425
1b
1bhtA01
A:35-125
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Plasminogen Kringle 4
(42)
Homologous Superfamily
:
Plasminogen Kringle 4
(42)
Human (Homo sapiens)
(37)
2a
1bhtB02
B:426-509
2b
1bhtA02
A:126-210
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Pfam Domains
(0, 0)
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all PFAM domains
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Asymmetric Unit 1
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