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1BHT
Asym. Unit
Info
Asym.Unit (70 KB)
Biol.Unit 1 (65 KB)
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(1)
Title
:
NK1 FRAGMENT OF HUMAN HEPATOCYTE GROWTH FACTOR
Authors
:
M. H. Ultsch, N. A. Lokker, P. J. Godowski, A. M. De Vos
Date
:
10 Jun 98 (Deposition) - 04 Nov 98 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Heparin-Binding Domain, Kringle, C-Met Receptor Angonist/ Antagonist, Growth Factor
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Ultsch, N. A. Lokker, P. J. Godowski, A. M. De Vos
Crystal Structure Of The Nk1 Fragment Of Human Hepatocyte Growth Factor At 2. 0 A Resolution.
Structure V. 6 1383 1998
(for further references see the
PDB file header
)
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Hetero Components
(2, 5)
Info
All Hetero Components
1a: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEa)
1b: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEb)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EPE
2
Ligand/Ion
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
2
SO4
3
Ligand/Ion
SULFATE ION
[
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]
Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LYS A:60 , LYS A:62 , ARG A:73 , ARG A:181 , HOH A:832
BINDING SITE FOR RESIDUE SO4 A 5
2
AC2
SOFTWARE
ARG B:468 , GLY B:469 , ASP B:471 , GLN B:473 , HOH B:624 , HOH B:699 , HOH B:887
BINDING SITE FOR RESIDUE SO4 B 6
3
AC3
SOFTWARE
ARG A:168 , GLY A:169 , LYS A:170 , ASP A:171 , HOH A:682 , HOH A:727
BINDING SITE FOR RESIDUE SO4 A 7
4
AC4
SOFTWARE
GLU A:183 , GLU A:184 , GLY A:185 , GLY A:186 , TRP A:188 , PHE A:190 , ARG A:197 , TYR A:198 , VAL A:200 , HOH A:710 , HOH A:724
BINDING SITE FOR RESIDUE EPE A 1
5
AC5
SOFTWARE
SER B:461 , GLU B:483 , GLU B:484 , GLY B:485 , GLY B:486 , TRP B:488 , PHE B:490 , ARG B:497 , HOH B:603 , HOH B:717
BINDING SITE FOR RESIDUE EPE B 2
[
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SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_014570 (S453I, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_014570
S
153
I
HGF_HUMAN
Polymorphism
17566
A
B
S
153
453
I
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(3, 7)
Info
All PROSITE Patterns/Profiles
1: PAN (A:37-123,B:337-423)
2: KRINGLE_2 (A:127-206,B:427-506|A:210-210|-|-)
3: KRINGLE_1 (A:176-189,B:476-489|-|-|-)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PAN
PS50948
PAN/Apple domain profile.
HGF_HUMAN
37-123
2
A:37-123
B:337-423
2
KRINGLE_2
PS50070
Kringle domain profile.
HGF_HUMAN
127-206
210-288
304-383
390-469
3
A:127-206
B:427-506
A:210-210
-
-
3
KRINGLE_1
PS00021
Kringle domain signature.
HGF_HUMAN
176-189
259-271
353-365
439-452
2
A:176-189
B:476-489
-
-
-
[
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]
Exons
(5, 10)
Info
All Exons
Exon 1.3b (A:35-85 | B:336-385)
Exon 1.4b (A:85-123 | B:385-423)
Exon 1.5b (A:123-161 | B:423-461)
Exon 1.6a (A:161-209 | B:461-509)
Exon 1.7 (A:209-210 | B:509-509)
View:
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Label:
All Exon Boundaries
1: Boundary 1.2a/1.3b
2: Boundary 1.3b/1.4b
3: Boundary 1.4b/1.5b
4: Boundary 1.5b/1.6a
5: Boundary 1.6a/1.7
6: Boundary 1.7/1.8
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2a
ENST00000222390
2a
ENSE00001949645
chr7:
81399514-81399200
315
HGF_HUMAN
1-30
30
0
-
-
1.3b
ENST00000222390
3b
ENSE00000698746
chr7:
81392188-81392023
166
HGF_HUMAN
30-85
56
2
A:35-85
B:336-385
51
50
1.4b
ENST00000222390
4b
ENSE00001790262
chr7:
81388120-81388008
113
HGF_HUMAN
85-123
39
2
A:85-123
B:385-423
39
39
1.5b
ENST00000222390
5b
ENSE00000698725
chr7:
81386619-81386505
115
HGF_HUMAN
123-161
39
2
A:123-161
B:423-461
39
39
1.6a
ENST00000222390
6a
ENSE00000698723
chr7:
81381578-81381436
143
HGF_HUMAN
161-209
49
2
A:161-209
B:461-509
49
49
1.7
ENST00000222390
7
ENSE00000698721
chr7:
81374436-81374316
121
HGF_HUMAN
209-249
41
2
A:209-210
B:509-509
2
1
1.8
ENST00000222390
8
ENSE00000698671
chr7:
81372787-81372669
119
HGF_HUMAN
249-289
41
0
-
-
1.10
ENST00000222390
10
ENSE00000698668
chr7:
81359095-81358921
175
HGF_HUMAN
289-347
59
0
-
-
1.11
ENST00000222390
11
ENSE00000698665
chr7:
81355333-81355206
128
HGF_HUMAN
347-390
44
0
-
-
1.12
ENST00000222390
12
ENSE00000698663
chr7:
81350163-81350061
103
HGF_HUMAN
390-424
35
0
-
-
1.13
ENST00000222390
13
ENSE00000698662
chr7:
81346681-81346548
134
HGF_HUMAN
424-469
46
0
-
-
1.14
ENST00000222390
14
ENSE00000698661
chr7:
81340835-81340797
39
HGF_HUMAN
469-482
14
0
-
-
1.15
ENST00000222390
15
ENSE00000698660
chr7:
81339559-81339463
97
HGF_HUMAN
482-514
33
0
-
-
1.16
ENST00000222390
16
ENSE00000698659
chr7:
81336680-81336606
75
HGF_HUMAN
514-539
26
0
-
-
1.17
ENST00000222390
17
ENSE00000698658
chr7:
81335743-81335603
141
HGF_HUMAN
539-586
48
0
-
-
1.18
ENST00000222390
18
ENSE00000698657
chr7:
81335069-81334963
107
HGF_HUMAN
586-622
37
0
-
-
1.19
ENST00000222390
19
ENSE00000698655
chr7:
81334851-81334706
146
HGF_HUMAN
622-670
49
0
-
-
1.20b
ENST00000222390
20b
ENSE00001870741
chr7:
81332073-81328322
3752
HGF_HUMAN
671-728
58
0
-
-
[
close EXON info
]
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1bhta1 (A:35-126)
1b: SCOP_d1bhtb1 (B:336-426)
2a: SCOP_d1bhta2 (A:127-210)
2b: SCOP_d1bhtb2 (B:427-509)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Small proteins
(3458)
Fold
:
Hairpin loop containing domain-like
(17)
Superfamily
:
Hairpin loop containing domain-like
(17)
Family
:
Hairpin loop containing domain
(15)
Protein domain
:
Hepatocyte growth factor
(11)
Human (Homo sapiens) [TaxId: 9606]
(11)
1a
d1bhta1
A:35-126
1b
d1bhtb1
B:336-426
Fold
:
Kringle-like
(68)
Superfamily
:
Kringle-like
(68)
Family
:
Kringle modules
(54)
Protein domain
:
NK1 fragment of hepatocyte growth factor
(8)
Human (Homo sapiens) [TaxId: 9606]
(8)
2a
d1bhta2
A:127-210
2b
d1bhtb2
B:427-509
[
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1bhtB01 (B:336-425)
1b: CATH_1bhtA01 (A:35-125)
2a: CATH_1bhtB02 (B:426-509)
2b: CATH_1bhtA02 (A:126-210)
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Topologies
(
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(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(bba) Sandwich
(528)
Topology
:
Hepatocyte Growth Factor
(13)
Homologous Superfamily
:
Hepatocyte Growth Factor
(13)
Human (Homo sapiens)
(9)
1a
1bhtB01
B:336-425
1b
1bhtA01
A:35-125
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Plasminogen Kringle 4
(42)
Homologous Superfamily
:
Plasminogen Kringle 4
(42)
Human (Homo sapiens)
(37)
2a
1bhtB02
B:426-509
2b
1bhtA02
A:126-210
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
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