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1BH5
Asym. Unit
Info
Asym.Unit (134 KB)
Biol.Unit 1 (66 KB)
Biol.Unit 2 (66 KB)
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(1)
Title
:
HUMAN GLYOXALASE I Q33E, E172Q DOUBLE MUTANT
Authors
:
A. D. Cameron, T. A. Jones
Date
:
13 Jun 98 (Deposition) - 04 Nov 98 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Lyase, Lactoylglutathione Lyase, Glyoxalase I
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Ridderstrom, A. D. Cameron, T. A. Jones, B. Mannervik
Involvement Of An Active-Site Zn2+ Ligand In The Catalytic Mechanism Of Human Glyoxalase I.
J. Biol. Chem. V. 273 21623 1998
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(2, 8)
Info
All Hetero Components
1a: S-HEXYLGLUTATHIONE (GTXa)
1b: S-HEXYLGLUTATHIONE (GTXb)
1c: S-HEXYLGLUTATHIONE (GTXc)
1d: S-HEXYLGLUTATHIONE (GTXd)
2a: ZINC ION (ZNa)
2b: ZINC ION (ZNb)
2c: ZINC ION (ZNc)
2d: ZINC ION (ZNd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GTX
4
Ligand/Ion
S-HEXYLGLUTATHIONE
2
ZN
4
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(20, 20)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: GH1 (UNKNOWN)
10: GH2 (UNKNOWN)
11: GH3 (UNKNOWN)
12: GH4 (UNKNOWN)
13: HD2 (UNKNOWN)
14: HD3 (UNKNOWN)
15: HD4 (UNKNOWN)
16: HD5 (UNKNOWN)
17: ZN1 (UNKNOWN)
18: ZN2 (UNKNOWN)
19: ZN3 (UNKNOWN)
20: ZN4 (UNKNOWN)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:126 , GLN A:172 , GLU B:33 , GLU B:99 , HOH B:202
BINDING SITE FOR RESIDUE ZN A 201
02
AC2
SOFTWARE
GLU A:33 , GLU A:99 , HOH A:202 , HIS B:126 , GLN B:172
BINDING SITE FOR RESIDUE ZN B 201
03
AC3
SOFTWARE
HIS C:126 , GLN C:172 , HOH C:202 , GLU D:33 , GLU D:99 , HOH D:203
BINDING SITE FOR RESIDUE ZN C 201
04
AC4
SOFTWARE
GLU C:33 , GLU C:99 , HOH C:203 , HOH C:204 , HIS D:126 , GLN D:172
BINDING SITE FOR RESIDUE ZN D 201
05
AC5
SOFTWARE
ARG A:122 , MET A:157 , PHE A:162 , HOH A:275 , HOH A:300 , HOH A:315 , HOH A:341 , ARG B:37 , CYS B:60 , PHE B:67 , LEU B:92 , THR B:101 , ASN B:103 , SER C:17 , HOH C:292
BINDING SITE FOR RESIDUE GTX A 200
06
AC6
SOFTWARE
ARG A:37 , CYS A:60 , PHE A:67 , THR A:101 , ASN A:103 , LYS A:139 , HOH A:202 , ARG B:122 , LYS B:150 , MET B:157 , PHE B:162 , MET B:183 , HOH B:209 , HOH B:213 , HOH B:281 , HOH B:328
BINDING SITE FOR RESIDUE GTX B 200
07
AC7
SOFTWARE
SER A:17 , ARG C:122 , MET C:157 , LEU C:160 , PHE C:162 , MET C:179 , HOH C:210 , HOH C:214 , HOH C:278 , HOH C:299 , HOH C:306 , HOH C:310 , HOH C:314 , ARG D:37 , CYS D:60 , PHE D:67 , LEU D:92 , ASN D:103
BINDING SITE FOR RESIDUE GTX C 200
08
AC8
SOFTWARE
ARG C:37 , CYS C:60 , PHE C:67 , THR C:101 , ASN C:103 , HOH C:245 , ARG D:122 , LEU D:160 , PHE D:162 , MET D:183 , HOH D:280
BINDING SITE FOR RESIDUE GTX D 200
09
GH1
UNKNOWN
ARG A:37 , ASN A:103 , ARG B:122
BINDING SITE FOR GSH MOIETY - SUBSTRATE BINDING SITE IS FORMED BY ZN2 HYD2 AND GSH2.
10
GH2
UNKNOWN
ARG B:37 , ASN B:103 , ARG A:122
BINDING SITE FOR GSH MOIETY - SUBSTRATE BINDING SITE IS FORMED BY ZN1 HYD1 AND GSH1.
11
GH3
UNKNOWN
ARG C:37 , ASN C:103 , ARG D:122
BINDING SITE FOR GSH MOIETY - SUBSTRATE BINDING SITE IS FORMED BY ZN2 HYD2 AND GSH2.
12
GH4
UNKNOWN
ARG D:37 , ASN D:103 , ARG C:122
BINDING SITE FOR GSH MOIETY - SUBSTRATE BINDING SITE IS FORMED BY ZN1 HYD1 AND GSH1.
13
HD2
UNKNOWN
CYS A:60 , PHE A:62 , MET A:65 , PHE A:67 , LEU A:69 , PHE A:71 , ILE A:88 , LEU A:92 , MET B:157 , LEU B:160 , PHE B:162 , LEU B:174 , MET B:179 , MET B:183
HYDROPHOBIC SUBSTRATE BINDING POCKET AT DIMER INTERFACE.
14
HD3
UNKNOWN
CYS B:60 , PHE B:62 , MET B:65 , PHE B:67 , LEU B:69 , PHE B:71 , ILE B:88 , LEU B:92 , MET A:157 , LEU A:160 , PHE A:162 , LEU A:174 , MET A:179 , MET A:183
HYDROPHOBIC SUBSTRATE BINDING POCKET AT DIMER INTERFACE.
15
HD4
UNKNOWN
CYS C:60 , PHE C:62 , MET C:65 , PHE C:67 , LEU C:69 , PHE C:71 , ILE C:88 , LEU C:92 , MET D:157 , LEU D:160 , PHE D:162 , LEU D:174 , MET D:179 , MET D:183
HYDROPHOBIC SUBSTRATE BINDING POCKET AT DIMER INTERFACE.
16
HD5
UNKNOWN
CYS D:60 , PHE D:62 , MET D:65 , PHE D:67 , LEU D:69 , PHE D:71 , ILE D:88 , LEU D:92 , MET C:157 , LEU C:160 , PHE C:162 , LEU C:174 , MET C:179 , MET C:183
HYDROPHOBIC SUBSTRATE BINDING POCKET AT DIMER INTERFACE.
17
ZN1
UNKNOWN
ZN B:201 , GLU A:33 , GLU A:99 , HIS B:126 , GLN B:172 , HOH A:202
ZINC BINDING SITE AT DIMER INTERFACE.
18
ZN2
UNKNOWN
ZN A:201 , GLU B:33 , GLU B:99 , HIS A:126 , GLN A:172 , HOH B:202 , HOH B:203
ZINC BINDING SITE AT DIMER INTERFACE.
19
ZN3
UNKNOWN
ZN D:201 , GLU C:33 , GLU C:99 , HIS D:126 , GLN D:172 , HOH C:203 , HOH C:204
ZINC BINDING SITE AT DIMER INTERFACE.
20
ZN4
UNKNOWN
ZN C:201 , GLU D:33 , GLU D:99 , HIS C:126 , GLN C:172 , HOH C:202
ZINC BINDING SITE AT DIMER INTERFACE.
[
close Site info
]
SAPs(SNPs)/Variants
(2, 8)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_031078 (C18Y, chain A/B/C/D, )
2: VAR_013481 (E110A, chain A/B/C/D, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_031078
C
19
Y
LGUL_HUMAN
Polymorphism
17855424
A/B/C/D
C
18
Y
2
UniProt
VAR_013481
E
111
A
LGUL_HUMAN
Polymorphism
4746
A/B/C/D
E
110
A
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(3, 12)
Info
All PROSITE Patterns/Profiles
1: VOC (A:30-176,B:30-176,C:30-176,D:30-17...)
2: GLYOXALASE_I_1 (A:34-54,B:34-54,C:34-54,D:34-54)
3: GLYOXALASE_I_2 (A:117-133,B:117-133,C:117-133,D:11...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
VOC
PS51819
Vicinal oxygen chelate (VOC) domain profile.
LGUL_HUMAN
31-177
4
A:30-176
B:30-176
C:30-176
D:30-176
2
GLYOXALASE_I_1
PS00934
Glyoxalase I signature 1.
LGUL_HUMAN
34-55
4
A:34-54
B:34-54
C:34-54
D:34-54
3
GLYOXALASE_I_2
PS00935
Glyoxalase I signature 2.
LGUL_HUMAN
118-134
4
A:117-133
B:117-133
C:117-133
D:117-133
[
close PROSITE info
]
Exons
(6, 24)
Info
All Exons
Exon 1.1 (A:7-27 | B:2-27 | C:7-27 | D:2-27)
Exon 1.2 (A:28-55 | B:28-55 | C:28-55 | D:28...)
Exon 1.3 (A:55-102 | B:55-102 | C:55-102 | D...)
Exon 1.4b (A:102-125 | B:102-125 | C:102-125 ...)
Exon 1.5 (A:125-155 | B:125-155 | C:125-155 ...)
Exon 1.6 (A:155-183 | B:155-183 | C:155-183 ...)
View:
Select:
Label:
All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/1.4b
5: Boundary 1.4b/1.5
6: Boundary 1.5/1.6
7: Boundary 1.6/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000373365
1
ENSE00001460407
chr6:
38670917-38670747
171
LGUL_HUMAN
1-28
28
4
A:7-27
B:2-27
C:7-27
D:2-27
21
26
21
26
1.2
ENST00000373365
2
ENSE00000750279
chr6:
38654750-38654668
83
LGUL_HUMAN
29-56
28
4
A:28-55
B:28-55
C:28-55
D:28-55
28
28
28
28
1.3
ENST00000373365
3
ENSE00000750268
chr6:
38652290-38652150
141
LGUL_HUMAN
56-103
48
4
A:55-102
B:55-102
C:55-102
D:55-102
48
48
48
48
1.4b
ENST00000373365
4b
ENSE00000750246
chr6:
38650651-38650584
68
LGUL_HUMAN
103-126
24
4
A:102-125
B:102-125
C:102-125
D:102-125
24
24
24
24
1.5
ENST00000373365
5
ENSE00002145874
chr6:
38649877-38649788
90
LGUL_HUMAN
126-156
31
4
A:125-155
B:125-155
C:125-155
D:125-155
31
31
31
31
1.6
ENST00000373365
6
ENSE00002199029
chr6:
38645159-38643719
1441
LGUL_HUMAN
156-184
29
4
A:155-183
B:155-183
C:155-183
D:155-183
29
29
29
29
[
close EXON info
]
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1bh5a_ (A:)
1b: SCOP_d1bh5b_ (B:)
1c: SCOP_d1bh5c_ (C:)
1d: SCOP_d1bh5d_ (D:)
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)
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(
)
(
)
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
(136)
Superfamily
:
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
(136)
Family
:
Glyoxalase I (lactoylglutathione lyase)
(16)
Protein domain
:
Glyoxalase I (lactoylglutathione lyase)
(10)
Human (Homo sapiens) [TaxId: 9606]
(4)
1a
d1bh5a_
A:
1b
d1bh5b_
B:
1c
d1bh5c_
C:
1d
d1bh5d_
D:
[
close SCOP info
]
CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1bh5A00 (A:7-183)
1b: CATH_1bh5C00 (C:7-183)
1c: CATH_1bh5B00 (B:2-183)
1d: CATH_1bh5D00 (D:2-183)
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Topologies
(
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(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1
(113)
Homologous Superfamily
:
2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1
(106)
Human (Homo sapiens)
(4)
1a
1bh5A00
A:7-183
1b
1bh5C00
C:7-183
1c
1bh5B00
B:2-183
1d
1bh5D00
D:2-183
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
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Asymmetric Unit 1
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Asym.Unit (134 KB)
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