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1BG4
Asym. Unit
Info
Asym.Unit (61 KB)
Biol.Unit 1 (56 KB)
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(1)
Title
:
XYLANASE FROM PENICILLIUM SIMPLICISSIMUM
Authors
:
A. Schmidt, C. Kratky
Date
:
05 Jun 98 (Deposition) - 12 Aug 98 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.75
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Family 10 Xylanase, Penicillium Simplicissimum, Tim-Barrel, Glycosyl Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Schmidt, A. Schlacher, W. Steiner, H. Schwab, C. Kratky
Structure Of The Xylanase From Penicillium Simplicissimum.
Protein Sci. V. 7 2081 1998
[
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Hetero Components
(4, 16)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
1e: GLYCEROL (GOLe)
1f: GLYCEROL (GOLf)
1g: GLYCEROL (GOLg)
2a: SODIUM ION (NAa)
2b: SODIUM ION (NAb)
2c: SODIUM ION (NAc)
2d: SODIUM ION (NAd)
2e: SODIUM ION (NAe)
2f: SODIUM ION (NAf)
3a: PYROGLUTAMIC ACID (PCAa)
4a: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSa)
4b: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
7
Ligand/Ion
GLYCEROL
2
NA
6
Ligand/Ion
SODIUM ION
3
PCA
1
Mod. Amino Acid
PYROGLUTAMIC ACID
4
TRS
2
Ligand/Ion
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
[
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Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: ACT (UNKNOWN)
11: BC1 (SOFTWARE)
12: BC2 (SOFTWARE)
13: BC3 (SOFTWARE)
14: BC4 (SOFTWARE)
15: BC5 (SOFTWARE)
16: BC6 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LEU A:226 , ALA A:227 , GLY A:230 , THR A:231 , LYS A:261
BINDING SITE FOR RESIDUE NA A 619
02
AC2
SOFTWARE
ARG A:162 , ASP A:165 , PRO A:166 , ALA A:168 , LEU A:170
BINDING SITE FOR RESIDUE NA A 620
03
AC3
SOFTWARE
TYR A:17 , ARG A:82 , ILE A:236 , THR A:237 , THR A:266
BINDING SITE FOR RESIDUE NA A 621
04
AC4
SOFTWARE
SER A:143 , TYR A:153 , HOH A:550
BINDING SITE FOR RESIDUE NA A 622
05
AC5
SOFTWARE
SER A:49 , ALA A:54 , THR A:63 , SER A:67 , HOH A:561
BINDING SITE FOR RESIDUE NA A 623
06
AC6
SOFTWARE
PRO A:46 , GLU A:47 , ASN A:48 , SER A:49 , MET A:50 , LYS A:51 , HIS A:84
BINDING SITE FOR RESIDUE NA A 624
07
AC7
SOFTWARE
TYR A:146 , ILE A:149 , GLY A:150 , GLU A:151 , GLY A:214 , SER A:217 , THR A:247 , ASP A:248 , ASN A:251 , HOH A:327 , HOH A:339 , HOH A:367 , HOH A:474 , HOH A:499 , HOH A:533
BINDING SITE FOR RESIDUE TRS A 632
08
AC8
SOFTWARE
GLN A:24 , TYR A:69 , GLY A:221 , HOH A:331 , HOH A:381 , HOH A:396 , HOH A:600 , HOH A:610
BINDING SITE FOR RESIDUE TRS A 633
09
AC9
SOFTWARE
ASP A:68 , ASN A:72 , ARG A:119 , TYR A:120 , LYS A:123 , HOH A:433 , HOH A:563
BINDING SITE FOR RESIDUE GOL A 625
10
ACT
UNKNOWN
GLU A:132 , GLU A:238
ACTIVE SITE.
11
BC1
SOFTWARE
THR A:26 , GLU A:47 , ASN A:48 , LYS A:193 , SER A:228 , ASP A:274 , HOH A:386 , HOH A:429 , HOH A:535 , GOL A:627
BINDING SITE FOR RESIDUE GOL A 626
12
BC2
SOFTWARE
ASN A:48 , SER A:49 , ALA A:54 , ALA A:227 , HOH A:479 , HOH A:510 , HOH A:535 , HOH A:561 , GOL A:626
BINDING SITE FOR RESIDUE GOL A 627
13
BC3
SOFTWARE
HIS A:13 , GLN A:61 , PHE A:62 , THR A:63 , LEU A:257 , HOH A:588
BINDING SITE FOR RESIDUE GOL A 628
14
BC4
SOFTWARE
LYS A:51 , HIS A:84 , GLU A:132 , GLN A:208 , GLU A:238 , TRP A:268 , HOH A:340 , HOH A:412 , GOL A:631
BINDING SITE FOR RESIDUE GOL A 629
15
BC5
SOFTWARE
SER A:5 , ASP A:7 , ALA A:8 , LYS A:11 , ALA A:39 , ASP A:40 , PHE A:41 , HOH A:434 , HOH A:607
BINDING SITE FOR RESIDUE GOL A 630
16
BC6
SOFTWARE
GLU A:47 , ASN A:48 , LYS A:51 , GLN A:91 , TRP A:268 , TRP A:276 , HOH A:353 , GOL A:629
BINDING SITE FOR RESIDUE GOL A 631
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: GH10_2 (A:21-301)
2: GH10_1 (A:231-241)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GH10_2
PS51760
Glycosyl hydrolases family 10 (GH10) domain profile.
XYNA_PENSI
21-301
1
A:21-301
2
GH10_1
PS00591
Glycosyl hydrolases family 10 (GH10) active site.
XYNA_PENSI
231-241
1
A:231-241
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1bg4a_ (A:)
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Classes
(
)
(
)
Folds
(
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)
Families
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
(Trans)glycosidases
(1191)
Family
:
beta-glycanases
(284)
Protein domain
:
Xylanase
(19)
Fungus (Penicillium simplicissimum) [TaxId: 69488]
(1)
1a
d1bg4a_
A:
[
close SCOP info
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1bg4A00 (A:2-302)
View:
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)
Homologous Superfamilies
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Glycosidases
(843)
Penicillium simplicissimum. Organism_taxid: 69488.
(8)
1a
1bg4A00
A:2-302
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Atom Selection
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Protein
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Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
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select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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