PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
1BFC
Asym. Unit
Info
Asym.Unit (29 KB)
Biol.Unit 1 (24 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
BASIC FIBROBLAST GROWTH FACTOR COMPLEXED WITH HEPARIN HEXAMER FRAGMENT
Authors
:
S. Faham, D. C. Rees
Date
:
12 Dec 95 (Deposition) - 03 Apr 96 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Growth Factor, Mitogen, Vascularization, Heparin-Binding,
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Faham, R. E. Hileman, J. R. Fromm, R. J. Linhardt, D. C. Rees
Heparin Structure And Interactions With Basic Fibroblast Growth Factor.
Science V. 271 1116 1996
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(3, 6)
Info
All Hetero Components
1a: 2-O-SULFO-ALPHA-L-IDOPYRANURONIC A... (IDSa)
1b: 2-O-SULFO-ALPHA-L-IDOPYRANURONIC A... (IDSb)
2a: N,O6-DISULFO-GLUCOSAMINE (SGNa)
2b: N,O6-DISULFO-GLUCOSAMINE (SGNb)
2c: N,O6-DISULFO-GLUCOSAMINE (SGNc)
3a: 1,4-DIDEOXY-5-DEHYDRO-O2-SULFO-GLU... (UAPa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
IDS
2
Ligand/Ion
2-O-SULFO-ALPHA-L-IDOPYRANURONIC ACID
2
SGN
3
Ligand/Ion
N,O6-DISULFO-GLUCOSAMINE
3
UAP
1
Ligand/Ion
1,4-DIDEOXY-5-DEHYDRO-O2-SULFO-GLUCURONIC ACID
[
close Hetero Component info
]
Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASN A:72 , PHE A:96 , ARG A:108 , ARG A:110 , SGN A:302
BINDING SITE FOR RESIDUE UAP A 301
2
AC2
SOFTWARE
ARG A:23 , ASN A:28 , LYS A:47 , SER A:48 , LYS A:120 , ARG A:121 , LYS A:126 , ALA A:137 , UAP A:301 , IDS A:303
BINDING SITE FOR RESIDUE SGN A 302
3
AC3
SOFTWARE
ASN A:28 , ARG A:121 , LYS A:126 , GLN A:135 , LYS A:136 , ALA A:137 , SGN A:302 , SGN A:304
BINDING SITE FOR RESIDUE IDS A 303
4
AC4
SOFTWARE
IDS A:303 , IDS A:305
BINDING SITE FOR RESIDUE SGN A 304
5
AC5
SOFTWARE
LYS A:136 , SGN A:304 , SGN A:306
BINDING SITE FOR RESIDUE IDS A 305
6
AC6
SOFTWARE
LYS A:27 , ARG A:34 , HIS A:36 , ARG A:45 , GLU A:46 , ASP A:49 , ASN A:102 , HOH A:202 , IDS A:305
BINDING SITE FOR RESIDUE SGN A 306
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: HBGF_FGF (A:81-104)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
HBGF_FGF
PS00247
HBGF/FGF family signature.
FGF2_HUMAN
222-245
1
A:81-104
[
close PROSITE info
]
Exons
(3, 3)
Info
All Exons
Exon 1.1 (A:21-52)
Exon 1.2 (A:52-86)
Exon 1.3b (A:87-144)
View:
Select:
Label:
All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/1.2
3: Boundary 1.2/1.3b
4: Boundary 1.3b/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000264498
1
ENSE00001081612
chr4:
123747863-123748507
645
FGF2_HUMAN
1-193
193
1
A:21-52
32
1.2
ENST00000264498
2
ENSE00000970285
chr4:
123797476-123797579
104
FGF2_HUMAN
193-227
35
1
A:52-86
35
1.3b
ENST00000264498
3b
ENSE00001081614
chr4:
123813366-123819391
6026
FGF2_HUMAN
228-288
61
1
A:87-144
58
[
close EXON info
]
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1bfca_ (A:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
beta-Trefoil
(385)
Superfamily
:
Cytokine
(169)
Family
:
Fibroblast growth factors (FGF)
(120)
Protein domain
:
Basic FGF (FGF2)
(16)
Human (Homo sapiens) [TaxId: 9606]
(16)
1a
d1bfca_
A:
[
close SCOP info
]
CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1bfcA00 (A:21-144)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Trefoil
(289)
Topology
:
Trefoil (Acidic Fibroblast Growth Factor, subunit A)
(289)
Homologous Superfamily
:
[code=2.80.10.50, no name defined]
(289)
Human (Homo sapiens)
(131)
1a
1bfcA00
A:21-144
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (29 KB)
Header - Asym.Unit
Biol.Unit 1 (24 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
1BFC
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
