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1BF5
Asym. Unit
Info
Asym.Unit (111 KB)
Biol.Unit 1 (192 KB)
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(1)
Title
:
TYROSINE PHOSPHORYLATED STAT-1/DNA COMPLEX
Authors
:
J. Kuriyan, Y. Zhao, X. Chen, U. Vinkemeier, D. Jeruzalmi, J. E. Darnell Jr.
Date
:
27 May 98 (Deposition) - 12 Aug 98 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.90
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (2x)
Keywords
:
Complex (Sh2 Domain/Dna), Sh2 Domain, Transcription Factor, Gene Regulation/Dna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
X. Chen, U. Vinkemeier, Y. Zhao, D. Jeruzalmi, J. E. Darnell Jr. , J. Kuriyan
Crystal Structure Of A Tyrosine Phosphorylated Stat-1 Dimer Bound To Dna.
Cell(Cambridge, Mass. ) V. 93 827 1998
(for further references see the
PDB file header
)
[
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]
Hetero Components
(1, 1)
Info
All Hetero Components
1a: O-PHOSPHOTYROSINE (PTRa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
PTR
1
Mod. Amino Acid
O-PHOSPHOTYROSINE
[
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]
Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
[
close Site info
]
SAPs(SNPs)/Variants
(21, 21)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_065934 (D165G, chain A, )
02: VAR_065935 (D165H, chain A, )
03: VAR_065936 (Y170N, chain A, )
04: VAR_065937 (C174R, chain A, )
05: VAR_065815 (K201N, chain A, )
06: VAR_065938 (M202I, chain A, )
07: VAR_065939 (M202V, chain A, )
08: VAR_065940 (A267V, chain A, )
09: VAR_065941 (Q271P, chain A, )
10: VAR_065942 (R274Q, chain A, )
11: VAR_065943 (R274W, chain A, )
12: VAR_065944 (K286I, chain A, )
13: VAR_065945 (T288A, chain A, )
14: VAR_065816 (E320Q, chain A, )
15: VAR_065817 (Q463H, chain A, )
16: VAR_036001 (P491A, chain A, )
17: VAR_STAT1_HUMAN_CCDS2309_1_01 (P491A, chain A, )
18: VAR_018265 (L600P, chain A, )
19: VAR_068713 (K637E, chain A, )
20: VAR_068714 (K673R, chain A, )
21: VAR_018266 (L706S, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_065934
D
165
G
STAT1_HUMAN
Disease (IMD31C)
---
A
D
165
G
02
UniProt
VAR_065935
D
165
H
STAT1_HUMAN
Disease (IMD31C)
---
A
D
165
H
03
UniProt
VAR_065936
Y
170
N
STAT1_HUMAN
Disease (IMD31C)
---
A
Y
170
N
04
UniProt
VAR_065937
C
174
R
STAT1_HUMAN
Disease (IMD31C)
---
A
C
174
R
05
UniProt
VAR_065815
K
201
N
STAT1_HUMAN
Disease (IMD31B)
---
A
K
201
N
06
UniProt
VAR_065938
M
202
I
STAT1_HUMAN
Disease (IMD31C)
---
A
M
202
I
07
UniProt
VAR_065939
M
202
V
STAT1_HUMAN
Disease (IMD31C)
---
A
M
202
V
08
UniProt
VAR_065940
A
267
V
STAT1_HUMAN
Disease (IMD31C)
---
A
A
267
V
09
UniProt
VAR_065941
Q
271
P
STAT1_HUMAN
Disease (IMD31C)
---
A
Q
271
P
10
UniProt
VAR_065942
R
274
Q
STAT1_HUMAN
Disease (IMD31C)
---
A
R
274
Q
11
UniProt
VAR_065943
R
274
W
STAT1_HUMAN
Disease (IMD31C)
---
A
R
274
W
12
UniProt
VAR_065944
K
286
I
STAT1_HUMAN
Disease (IMD31C)
---
A
K
286
I
13
UniProt
VAR_065945
T
288
A
STAT1_HUMAN
Disease (IMD31C)
---
A
T
288
A
14
UniProt
VAR_065816
E
320
Q
STAT1_HUMAN
Disease (IMD31A)
---
A
E
320
Q
15
UniProt
VAR_065817
Q
463
H
STAT1_HUMAN
Disease (IMD31A)
---
A
Q
463
H
16
UniProt
VAR_036001
P
491
A
STAT1_HUMAN
Unclassified
---
A
P
491
A
17
CancerSNP
VAR_STAT1_HUMAN_CCDS2309_1_01
*
P
491
A
STAT1_HUMAN
Disease (Breast cancer)
---
A
P
491
A
18
UniProt
VAR_018265
L
600
P
STAT1_HUMAN
Disease (IMD31B)
---
A
L
600
P
19
UniProt
VAR_068713
K
637
E
STAT1_HUMAN
Disease (IMD31A)
---
A
K
637
E
20
UniProt
VAR_068714
K
673
R
STAT1_HUMAN
Disease (IMD31A)
---
A
K
673
R
21
UniProt
VAR_018266
L
706
S
STAT1_HUMAN
Disease (IMD31A)
---
A
L
706
S
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: SH2 (A:573-670)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SH2
PS50001
Src homology 2 (SH2) domain profile.
STAT1_HUMAN
573-670
1
A:573-670
[
close PROSITE info
]
Exons
(18, 18)
Info
All Exons
Exon 1.9b (A:136-154)
Exon 1.10 (A:155-181)
Exon 1.11 (A:181-211 (gaps))
Exon 1.12 (A:212-262)
Exon 1.13 (A:262-315)
Exon 1.14 (A:315-346)
Exon 1.15 (A:346-366)
Exon 1.16 (A:366-376)
Exon 1.17 (A:376-407)
Exon 1.18 (A:408-421)
Exon 1.19 (A:422-449)
Exon 1.20a (A:450-482)
Exon 1.21 (A:483-528)
Exon 1.22 (A:528-544)
Exon 1.23 (A:545-576)
Exon 1.24a (A:576-625)
Exon 1.25a (A:625-683)
Exon 1.26a (A:700-710)
View:
Select:
Label:
All Exon Boundaries
01: Boundary 1.8/1.9b
02: Boundary 1.9b/1.10
03: Boundary 1.10/1.11
04: Boundary 1.11/1.12
05: Boundary 1.12/1.13
06: Boundary 1.13/1.14
07: Boundary 1.14/1.15
08: Boundary 1.15/1.16
09: Boundary 1.16/1.17
10: Boundary 1.17/1.18
11: Boundary 1.18/1.19
12: Boundary 1.19/1.20a
13: Boundary 1.20a/1.21
14: Boundary 1.21/1.22
15: Boundary 1.22/1.23
16: Boundary 1.23/1.24a
17: Boundary 1.24a/1.25a
18: Boundary 1.25a/1.26a
19: Boundary 1.26a/1.28b
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.3a
ENST00000361099
3a
ENSE00001789696
chr2:
191878976-191878744
233
STAT1_HUMAN
-
0
0
-
-
1.4b
ENST00000361099
4b
ENSE00001424647
chr2:
191878404-191878251
154
STAT1_HUMAN
-
0
0
-
-
1.6
ENST00000361099
6
ENSE00001710084
chr2:
191874730-191874602
129
STAT1_HUMAN
1-43
43
0
-
-
1.7b
ENST00000361099
7b
ENSE00000783935
chr2:
191873833-191873689
145
STAT1_HUMAN
43-91
49
0
-
-
1.8
ENST00000361099
8
ENSE00000783936
chr2:
191872387-191872289
99
STAT1_HUMAN
92-124
33
0
-
-
1.9b
ENST00000361099
9b
ENSE00000783937
chr2:
191865889-191865800
90
STAT1_HUMAN
125-154
30
1
A:136-154
19
1.10
ENST00000361099
10
ENSE00002191774
chr2:
191864430-191864352
79
STAT1_HUMAN
155-181
27
1
A:155-181
27
1.11
ENST00000361099
11
ENSE00000783939
chr2:
191863034-191862943
92
STAT1_HUMAN
181-211
31
1
A:181-211 (gaps)
31
1.12
ENST00000361099
12
ENSE00001660227
chr2:
191862733-191862582
152
STAT1_HUMAN
212-262
51
1
A:212-262
51
1.13
ENST00000361099
13
ENSE00001759028
chr2:
191859945-191859787
159
STAT1_HUMAN
262-315
54
1
A:262-315
54
1.14
ENST00000361099
14
ENSE00001685361
chr2:
191856046-191855954
93
STAT1_HUMAN
315-346
32
1
A:315-346
32
1.15
ENST00000361099
15
ENSE00001600539
chr2:
191854400-191854341
60
STAT1_HUMAN
346-366
21
1
A:346-366
21
1.16
ENST00000361099
16
ENSE00001722161
chr2:
191851794-191851765
30
STAT1_HUMAN
366-376
11
1
A:366-376
11
1.17
ENST00000361099
17
ENSE00001753235
chr2:
191851673-191851580
94
STAT1_HUMAN
376-407
32
1
A:376-407
32
1.18
ENST00000361099
18
ENSE00001793779
chr2:
191850386-191850345
42
STAT1_HUMAN
408-421
14
1
A:408-421
14
1.19
ENST00000361099
19
ENSE00001709373
chr2:
191849119-191849036
84
STAT1_HUMAN
422-449
28
1
A:422-449
28
1.20a
ENST00000361099
20a
ENSE00001681940
chr2:
191848466-191848368
99
STAT1_HUMAN
450-482
33
1
A:450-482
33
1.21
ENST00000361099
21
ENSE00001626985
chr2:
191847244-191847109
136
STAT1_HUMAN
483-528
46
1
A:483-528
46
1.22
ENST00000361099
22
ENSE00001790158
chr2:
191845395-191845346
50
STAT1_HUMAN
528-544
17
1
A:528-544
17
1.23
ENST00000361099
23
ENSE00001681641
chr2:
191844592-191844498
95
STAT1_HUMAN
545-576
32
1
A:545-576
32
1.24a
ENST00000361099
24a
ENSE00001644039
chr2:
191843727-191843582
146
STAT1_HUMAN
576-625
50
1
A:576-625
50
1.25a
ENST00000361099
25a
ENSE00001606617
chr2:
191841751-191841566
186
STAT1_HUMAN
625-687
63
1
A:625-683
59
1.26a
ENST00000361099
26a
ENSE00001259817
chr2:
191840613-191840538
76
STAT1_HUMAN
687-712
26
1
A:700-710
11
1.28b
ENST00000361099
28b
ENSE00001650945
chr2:
191839658-191839556
103
STAT1_HUMAN
712-746
35
0
-
-
1.29d
ENST00000361099
29d
ENSE00001068687
chr2:
191835443-191833760
1684
STAT1_HUMAN
747-750
4
0
-
-
[
close EXON info
]
SCOP Domains
(3, 3)
Info
All SCOP Domains
1a: SCOP_d1bf5a1 (A:136-316)
2a: SCOP_d1bf5a2 (A:317-568)
3a: SCOP_d1bf5a3 (A:569-710)
View:
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(
)
(
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Folds
(
)
(
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(
)
(
)
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
STAT-like
(26)
Superfamily
:
STAT
(4)
Family
:
STAT
(4)
Protein domain
:
STAT-1, coiled coil domain
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d1bf5a1
A:136-316
Class
:
All beta proteins
(24004)
Fold
:
Common fold of diphtheria toxin/transcription factors/cytochrome f
(364)
Superfamily
:
p53-like transcription factors
(153)
Family
:
STAT DNA-binding domain
(4)
Protein domain
:
STAT-1, DNA-binding domain
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
2a
d1bf5a2
A:317-568
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
SH2-like
(260)
Superfamily
:
SH2 domain
(260)
Family
:
SH2 domain
(225)
Protein domain
:
STAT-1
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
3a
d1bf5a3
A:569-710
[
close SCOP info
]
CATH Domains
(4, 4)
Info
all CATH domains
1a: CATH_1bf5A04 (A:582-710)
2a: CATH_1bf5A03 (A:461-581)
3a: CATH_1bf5A01 (A:136-317)
4a: CATH_1bf5A02 (A:318-460)
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(
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(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
SHC Adaptor Protein
(206)
Homologous Superfamily
:
SHC Adaptor Protein
(206)
Human (Homo sapiens)
(147)
1a
1bf5A04
A:582-710
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Recoverin; domain 1
(474)
Homologous Superfamily
:
EF-hand
(412)
Human (Homo sapiens)
(106)
2a
1bf5A03
A:461-581
Architecture
:
Up-down Bundle
(3216)
Topology
:
Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2
(267)
Homologous Superfamily
:
[code=1.20.1050.20, no name defined]
(4)
Human (Homo sapiens)
(2)
3a
1bf5A01
A:136-317
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
[code=2.60.40.630, no name defined]
(5)
Human (Homo sapiens)
(2)
4a
1bf5A02
A:318-460
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
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