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1BD3
Asym. Unit
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Asym.Unit (159 KB)
Biol.Unit 1 (154 KB)
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(1)
Title
:
STRUCTURE OF THE APO URACIL PHOSPHORIBOSYLTRANSFERASE, 2 MUTANT C128V
Authors
:
M. A. Schumacher, D. Carter, D. Scott, D. Roos, B. Ullman, R. G. Brennan
Date
:
12 May 98 (Deposition) - 18 May 99 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.93
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Transferase, Glycosyltransferase, Uprtase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. A. Schumacher, D. Carter, D. M. Scott, D. S. Roos, B. Ullman, R. G. Brennan
Crystal Structures Of Toxoplasma Gondii Uracil Phosphoribosyltransferase Reveal The Atomic Basis Of Pyrimidine Discrimination And Prodrug Binding.
Embo J. V. 17 3219 1998
(for further references see the
PDB file header
)
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Hetero Components
(1, 8)
Info
All Hetero Components
1a: PHOSPHATE ION (PO4a)
1b: PHOSPHATE ION (PO4b)
1c: PHOSPHATE ION (PO4c)
1d: PHOSPHATE ION (PO4d)
1e: PHOSPHATE ION (PO4e)
1f: PHOSPHATE ION (PO4f)
1g: PHOSPHATE ION (PO4g)
1h: PHOSPHATE ION (PO4h)
View:
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Label:
No.
Name
Count
Type
Full Name
1
PO4
8
Ligand/Ion
PHOSPHATE ION
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Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LYS D:104 , HOH D:937
BINDING SITE FOR RESIDUE PO4 D 799
2
AC2
SOFTWARE
ARG C:137 , ALA C:168 , THR C:169 , ALA C:170 , GLY C:171 , SER C:172 , HOH C:904
BINDING SITE FOR RESIDUE PO4 C 799
3
AC3
SOFTWARE
LYS A:59 , LYS C:104 , ARG C:129 , ARG C:158 , HOH C:979
BINDING SITE FOR RESIDUE PO4 C 899
4
AC4
SOFTWARE
ARG B:137 , CYS B:167 , ALA B:168 , THR B:169 , ALA B:170 , GLY B:171 , SER B:172 , HOH B:909 , HOH B:991
BINDING SITE FOR RESIDUE PO4 B 799
5
AC5
SOFTWARE
LYS B:104 , ARG B:129 , ARG B:158 , HOH B:900 , HOH B:935 , LYS D:59
BINDING SITE FOR RESIDUE PO4 B 899
6
AC6
SOFTWARE
ARG A:137 , ALA A:168 , THR A:169 , ALA A:170 , GLY A:171 , SER A:172 , HOH A:926
BINDING SITE FOR RESIDUE PO4 A 799
7
AC7
SOFTWARE
LYS A:104 , ARG A:129 , ARG A:158 , HOH A:941 , LYS C:59
BINDING SITE FOR RESIDUE PO4 A 899
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1bd3a_ (A:)
1b: SCOP_d1bd3b_ (B:)
1c: SCOP_d1bd3c_ (C:)
1d: SCOP_d1bd3d_ (D:)
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Protein Domains
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(
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Organisms
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)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
PRTase-like
(145)
Superfamily
:
PRTase-like
(145)
Family
:
Phosphoribosyltransferases (PRTases)
(100)
Protein domain
:
Uracil PRTase, Upp
(14)
Toxoplasma gondii [TaxId: 5811]
(6)
1a
d1bd3a_
A:
1b
d1bd3b_
B:
1c
d1bd3c_
C:
1d
d1bd3d_
D:
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1bd3A00 (A:21-244)
1b: CATH_1bd3B00 (B:21-244)
1c: CATH_1bd3C00 (C:21-244)
1d: CATH_1bd3D00 (D:21-244)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.2020, no name defined]
(117)
Toxoplasma gondii. Organism_taxid: 5811.
(7)
1a
1bd3A00
A:21-244
1b
1bd3B00
B:21-244
1c
1bd3C00
C:21-244
1d
1bd3D00
D:21-244
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Asym.Unit (159 KB)
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