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1BCC
Biol. Unit 1
Info
Asym.Unit (324 KB)
Biol.Unit 1 (622 KB)
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(1)
Title
:
CYTOCHROME BC1 COMPLEX FROM CHICKEN
Authors
:
Z. Zhang, L. Huang, V. M. Shulmeister, Y. -I. Chi, K. K. Kim, L. -W. Hung, A. R. Crofts, E. A. Berry, S. -H. Kim
Date
:
23 Mar 98 (Deposition) - 19 Aug 98 (Release) - 29 Oct 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.16
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J (2x)
Keywords
:
Ubiquinone, Oxidoreductase, Redox Enzyme, Membrane Protein, Respiratory Chain, Electron Transport
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Z. Zhang, L. Huang, V. M. Shulmeister, Y. I. Chi, K. K. Kim, L. W. Hung, A. R. Crofts, E. A. Berry, S. H. Kim
Electron Transfer By Domain Movement In Cytochrome Bc1.
Nature V. 392 677 1998
[
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Hetero Components
(5, 16)
Info
All Hetero Components
1a: B-OCTYLGLUCOSIDE (BOGa)
2a: FE2/S2 (INORGANIC) CLUSTER (FESa)
3a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
3b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
3c: PROTOPORPHYRIN IX CONTAINING FE (HEMc)
4a: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOE... (PEEa)
4b: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOE... (PEEb)
5a: UBIQUINONE-10 (U10a)
6a: (UNKa)
6aa: (UNKaa)
6ab: (UNKab)
6ac: (UNKac)
6ad: (UNKad)
6ae: (UNKae)
6af: (UNKaf)
6ag: (UNKag)
6b: (UNKb)
6c: (UNKc)
6d: (UNKd)
6e: (UNKe)
6f: (UNKf)
6g: (UNKg)
6h: (UNKh)
6i: (UNKi)
6j: (UNKj)
6k: (UNKk)
6l: (UNKl)
6m: (UNKm)
6n: (UNKn)
6o: (UNKo)
6p: (UNKp)
6q: (UNKq)
6r: (UNKr)
6s: (UNKs)
6t: (UNKt)
6u: (UNKu)
6v: (UNKv)
6w: (UNKw)
6x: (UNKx)
6y: (UNKy)
6z: (UNKz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BOG
2
Ligand/Ion
B-OCTYLGLUCOSIDE
2
FES
2
Ligand/Ion
FE2/S2 (INORGANIC) CLUSTER
3
HEM
6
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
4
PEE
4
Ligand/Ion
1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE
5
U10
2
Ligand/Ion
UBIQUINONE-10
6
UNK
-1
Mod. Amino Acid
[
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: BHI (UNKNOWN)
10: BLO (UNKNOWN)
11: C1H (UNKNOWN)
12: FES (UNKNOWN)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR C:76 , HIS D:200 , ARG D:203 , LYS D:207 , MET D:211 , ASN E:53 , GLN E:57 , ASP J:40
BINDING SITE FOR RESIDUE BOG D 242
02
AC2
SOFTWARE
GLN C:45 , GLY C:49 , LEU C:50 , ALA C:53 , ARG C:81 , HIS C:84 , GLY C:131 , LEU C:134 , PRO C:135 , HIS C:183 , PHE C:184 , PRO C:187
BINDING SITE FOR RESIDUE HEM C 381
03
AC3
SOFTWARE
TRP C:32 , GLY C:35 , LEU C:38 , ALA C:39 , HIS C:98 , ILE C:99 , ARG C:101 , SER C:107 , GLY C:117 , LEU C:120 , HIS C:197 , LEU C:198 , SER C:206 , ASN C:207 , U10 C:383
BINDING SITE FOR RESIDUE HEM C 382
04
AC4
SOFTWARE
VAL D:36 , CYS D:37 , CYS D:40 , HIS D:41 , ASN D:105 , PRO D:110 , ARG D:120 , TYR D:126 , VAL D:127 , GLY D:159 , MET D:160
BINDING SITE FOR RESIDUE HEM D 243
05
AC5
SOFTWARE
CYS E:139 , HIS E:141 , LEU E:142 , CYS E:144 , CYS E:158 , CYS E:160 , HIS E:161 , SER E:163
BINDING SITE FOR RESIDUE FES E 197
06
AC6
SOFTWARE
SER C:18 , LEU C:22 , SER C:36 , HIS C:202 , SER C:206 , PHE C:221 , ASP C:229 , HEM C:382
BINDING SITE FOR RESIDUE U10 C 383
07
AC7
SOFTWARE
TYR E:37 , THR E:40 , THR E:44 , VAL E:47 , PHE J:14 , ALA J:21 , VAL J:25 , ALA J:28 , LEU J:29
BINDING SITE FOR RESIDUE PEE E 198
08
AC8
SOFTWARE
TRP C:31 , PHE C:96 , ILE C:99 , TYR C:105 , THR C:317 , GLN C:323 , TRP C:327 , TYR C:359 , ASN F:69 , VAL G:48
BINDING SITE FOR RESIDUE PEE C 384
09
BHI
UNKNOWN
HIS C:98 , HIS C:197
HISTIDINE AXIAL LIGANDS OF HIGH POTENTIAL HEME OF CYTOCHROME B.
10
BLO
UNKNOWN
HIS C:84 , HIS C:183
HISTIDINE AXIAL LIGANDS OF LOW POTENTIAL HEME OF CYTOCHROME B.
11
C1H
UNKNOWN
HIS D:41 , MET D:160
HISTIDINE AND METHIONINE AXIAL LIGANDS OF HIGH POTENTIAL HEME OF CYTOCHROME C1.
12
FES
UNKNOWN
CYS E:139 , HIS E:141 , CYS E:158 , HIS E:161
HISTIDINE AND CYSTINE LIGANDS OF THE RIESKE IRON -SULFUR CLUSTER.
[
close Site info
]
SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_QCR2_BOVIN_001 (T27R, chain B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_QCR2_BOVIN_001
*
T
41
R
QCR2_BOVIN
---
---
B
T
27
R
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(4, 10)
Info
All PROSITE Patterns/Profiles
1: INSULINASE (B:54-77)
2: CYTC (D:24-125)
3: RIESKE (E:96-193)
4: CYTB_CTER (C:211-380)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
INSULINASE
PS00143
Insulinase family, zinc-binding region signature.
QCR2_BOVIN
68-91
2
B:54-77
2
CYTC
PS51007
Cytochrome c family profile.
CY1_BOVIN
108-209
2
D:24-125
3
RIESKE
PS51296
Rieske [2Fe-2S] iron-sulfur domain profile.
UCRI_CHICK
172-270
2
E:96-193
UCRI_BOVIN
187-272
2
E:109-194
4
CYTB_CTER
PS51003
Cytochrome b/b6 C-terminal region profile.
CYB_CHICK
211-380
2
C:211-380
[
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Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(12, 14)
Info
All SCOP Domains
01a: SCOP_d1bccd2 (D:1-195)
02a: SCOP_d1bcce1 (E:70-196)
03a: SCOP_d1bcca1 (A:4-232)
03b: SCOP_d1bcca2 (A:233-445)
04a: SCOP_d1bccb1 (B:18-235)
04b: SCOP_d1bccb2 (B:236-439)
05a: SCOP_d1bccf_ (F:)
06a: SCOP_d1bccc2 (C:262-380)
07a: SCOP_d1bccc3 (C:2-261)
08a: SCOP_d1bcch_ (H:)
09a: SCOP_d1bccd3 (D:196-241)
10a: SCOP_d1bcce2 (E:1-69)
11a: SCOP_d1bccj_ (J:)
12a: SCOP_d1bccg_ (G:)
View:
Select:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Cytochrome c
(308)
Superfamily
:
Cytochrome c
(308)
Family
:
Cytochrome bc1 domain
(36)
Protein domain
:
Cytochrome bc1 domain
(27)
Chicken (Gallus gallus) [TaxId: 9031]
(3)
01a
d1bccd2
D:1-195
Class
:
All beta proteins
(24004)
Fold
:
ISP domain
(115)
Superfamily
:
ISP domain
(115)
Family
:
Rieske iron-sulfur protein (ISP)
(50)
Protein domain
:
ISP subunit of the mitochondrial cytochrome bc1-complex, water-soluble domain
(28)
Chicken (Gallus gallus) [TaxId: 9031]
(3)
02a
d1bcce1
E:70-196
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
LuxS/MPP-like metallohydrolase
(89)
Superfamily
:
LuxS/MPP-like metallohydrolase
(89)
Family
:
MPP-like
(65)
Protein domain
:
Cytochrome bc1 core subunit 1
(27)
Chicken (Gallus gallus) [TaxId: 9031]
(3)
03a
d1bcca1
A:4-232
03b
d1bcca2
A:233-445
Protein domain
:
Cytochrome bc1 core subunit 2
(27)
Chicken (Gallus gallus) [TaxId: 9031]
(3)
04a
d1bccb1
B:18-235
04b
d1bccb2
B:236-439
Class
:
Membrane and cell surface proteins and peptides
(2046)
Fold
:
14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
(36)
Superfamily
:
14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
(36)
Family
:
14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
(36)
Protein domain
:
14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
(21)
Chicken (Gallus gallus) [TaxId: 9031]
(3)
05a
d1bccf_
F:
Fold
:
a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
(46)
Superfamily
:
a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
(46)
Family
:
a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
(39)
Protein domain
:
Mitochondrial cytochrome b subunit, C-terminal domain
(30)
Chicken (Gallus gallus) [TaxId: 9031]
(8)
06a
d1bccc2
C:262-380
Fold
:
Heme-binding four-helical bundle
(113)
Superfamily
:
Transmembrane di-heme cytochromes
(48)
Family
:
Cytochrome b of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
(46)
Protein domain
:
Mitochondrial cytochrome b subunit, N-terminal domain
(30)
Chicken (Gallus gallus) [TaxId: 9031]
(8)
07a
d1bccc3
C:2-261
Fold
:
Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
(36)
Superfamily
:
Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
(36)
Family
:
Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
(36)
Protein domain
:
Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
(20)
Chicken (Gallus gallus) [TaxId: 9031]
(3)
08a
d1bcch_
H:
Fold
:
Single transmembrane helix
(568)
Superfamily
:
Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor
(36)
Family
:
Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor
(27)
Protein domain
:
Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor
(27)
Chicken (Gallus gallus) [TaxId: 9031]
(3)
09a
d1bccd3
D:196-241
Superfamily
:
ISP transmembrane anchor
(35)
Family
:
ISP transmembrane anchor
(32)
Protein domain
:
Iron-sulfur subunit (ISP) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane region
(27)
Chicken (Gallus gallus) [TaxId: 9031]
(3)
10a
d1bcce2
E:1-69
Superfamily
:
Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
(36)
Family
:
Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
(36)
Protein domain
:
Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
(25)
Chicken (Gallus gallus) [TaxId: 9031]
(3)
11a
d1bccj_
J:
Superfamily
:
Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
(36)
Family
:
Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
(36)
Protein domain
:
Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
(28)
Chicken (Gallus gallus) [TaxId: 9031]
(3)
12a
d1bccg_
G:
[
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]
CATH Domains
(10, 13)
Info
all CATH domains
01a: CATH_1bccA02 (A:239-442)
01b: CATH_1bccA01 (A:14-227)
01c: CATH_1bccB01 (B:18-227)
01d: CATH_1bccB02 (B:239-439)
02a: CATH_1bccD02 (D:1-196)
03a: CATH_1bccF00 (F:10-109)
04a: CATH_1bccH00 (H:13-78)
05a: CATH_1bccC00 (C:2-380)
06a: CATH_1bccD01 (D:197-241)
07a: CATH_1bccG00 (G:2-79)
08a: CATH_1bccJ00 (J:4-62)
09a: CATH_1bccE01 (E:1-64)
10a: CATH_1bccE02 (E:65-196)
View:
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Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Cytochrome Bc1 Complex; Chain A, domain 1
(45)
Homologous Superfamily
:
Cytochrome Bc1 Complex; Chain A, domain 1
(45)
Chicken (Gallus gallus)
(15)
01a
1bccA02
A:239-442
01b
1bccA01
A:14-227
01c
1bccB01
B:18-227
01d
1bccB02
B:239-439
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Cytochrome Bc1 Complex; Chain D, domain 2
(279)
Homologous Superfamily
:
Cytochrome c
(279)
Chicken (Gallus gallus)
(15)
02a
1bccD02
D:1-196
Topology
:
Cytochrome Bc1 Complex; Chain F
(39)
Homologous Superfamily
:
Cytochrome Bc1 Complex; Chain F
(39)
Chicken (Gallus gallus)
(15)
03a
1bccF00
F:10-109
Topology
:
Helix Hairpins
(718)
Homologous Superfamily
:
[code=1.10.287.20, no name defined]
(39)
Chicken (Gallus gallus)
(15)
04a
1bccH00
H:13-78
Architecture
:
Up-down Bundle
(3216)
Topology
:
Cytochrome Bc1 Complex; Chain C
(51)
Homologous Superfamily
:
Cytochrome Bc1 Complex; Chain C
(51)
Chicken (Gallus gallus)
(15)
05a
1bccC00
C:2-380
Topology
:
Single alpha-helices involved in coiled-coils or other helix-helix interfaces
(552)
Homologous Superfamily
:
[code=1.20.5.100, no name defined]
(56)
Chicken (Gallus gallus)
(15)
06a
1bccD01
D:197-241
Homologous Superfamily
:
[code=1.20.5.210, no name defined]
(39)
Chicken (Gallus gallus)
(15)
07a
1bccG00
G:2-79
Homologous Superfamily
:
[code=1.20.5.260, no name defined]
(39)
Chicken (Gallus gallus)
(15)
08a
1bccJ00
J:4-62
Homologous Superfamily
:
[code=1.20.5.270, no name defined]
(39)
Chicken (Gallus gallus)
(15)
09a
1bccE01
E:1-64
Class
:
Mainly Beta
(13760)
Architecture
:
3-layer Sandwich
(102)
Topology
:
Rieske Iron-sulfur Protein
(99)
Homologous Superfamily
:
'Rieske'-like iron-sulphur domains
(99)
Chicken (Gallus gallus)
(15)
10a
1bccE02
E:65-196
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
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