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1BBR
Biol. Unit 2
Info
Asym.Unit (169 KB)
Biol.Unit 1 (57 KB)
Biol.Unit 2 (56 KB)
Biol.Unit 3 (56 KB)
Biol.Unit 4 (111 KB)
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(1)
Title
:
THE STRUCTURE OF RESIDUES 7-16 OF THE A ALPHA CHAIN OF HUMAN FIBRINOGEN BOUND TO BOVINE THROMBIN AT 2.3 ANGSTROMS RESOLUTION
Authors
:
P. Martin, B. Edwards
Date
:
27 Apr 92 (Deposition) - 31 Jan 94 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : E,F,G,H,I,J,K,L,M,N
Biol. Unit 1: E,F,H,L (1x)
Biol. Unit 2: G,J,K (1x)
Biol. Unit 3: I,M,N (1x)
Biol. Unit 4: G,I,J,K,M,N (1x)
Keywords
:
Serine Protease
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. D. Martin, W. Robertson, D. Turk, R. Huber, W. Bode, B. F. Edwards
The Structure Of Residues 7-16 Of The A Alpha-Chain Of Human Fibrinogen Bound To Bovine Thrombin At 2. 3-A Resolution.
J. Biol. Chem. V. 267 7911 1992
(for further references see the
PDB file header
)
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Hetero Components
(1, 1)
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All Hetero Components
1a: ACETYL GROUP (ACEa)
1b: ACETYL GROUP (ACEb)
1c: ACETYL GROUP (ACEc)
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No.
Name
Count
Type
Full Name
1
ACE
1
Mod. Amino Acid
ACETYL GROUP
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Sites
(0, 0)
Info
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SAPs(SNPs)/Variants
(5, 5)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_THRB_BOVIN_001 (D222N, chain K, )
2: VAR_002390 (D309N, chain G, )
3: VAR_002391 (G314V, chain G, )
4: VAR_002392 (R318C, chain G, )
5: VAR_002393 (R318H, chain G, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_THRB_BOVIN_001
*
D
600
N
THRB_BOVIN
---
---
K
D
222
N
2
UniProt
VAR_002390
D
26
N
FIBA_HUMAN
Unclassified
---
G
D
309
N
3
UniProt
VAR_002391
G
31
V
FIBA_HUMAN
Unclassified
---
G
G
314
V
4
UniProt
VAR_002392
R
35
C
FIBA_HUMAN
Disease (DYSFIBRIN)
---
G
R
318
C
5
UniProt
VAR_002393
R
35
H
FIBA_HUMAN
Polymorphism
---
G
R
318
H
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: TRYPSIN_DOM (K:16-243)
2: TRYPSIN_HIS (K:53-58)
3: TRYPSIN_SER (K:189-200)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TRYPSIN_DOM
PS50240
Serine proteases, trypsin domain profile.
THRB_BOVIN
367-621
1
-
K:16-243
-
2
TRYPSIN_HIS
PS00134
Serine proteases, trypsin family, histidine active site.
THRB_BOVIN
405-410
1
-
K:53-58
-
3
TRYPSIN_SER
PS00135
Serine proteases, trypsin family, serine active site.
THRB_BOVIN
565-576
1
-
K:189-200
-
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d1bbr_1 (L:,H:,E:)
1b: SCOP_d1bbr_2 (J:,K:)
1c: SCOP_d1bbr_3 (M:,N:)
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)
Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Trypsin-like serine proteases
(1752)
Superfamily
:
Trypsin-like serine proteases
(1752)
Family
:
Eukaryotic proteases
(1343)
Protein domain
:
Thrombin
(188)
Cow (Bos taurus) [TaxId: 9913]
(19)
1a
d1bbr.1
L:,H:,E:
1b
d1bbr.2
J:,K:
1c
d1bbr.3
M:,N:
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CATH Domains
(2, 9)
Info
all CATH domains
1a: CATH_1bbrJ00 (J:1H-15)
1b: CATH_1bbrL00 (L:1H-15)
1c: CATH_1bbrM00 (M:1H-15)
2a: CATH_1bbrK02 (K:28-120,K:233-247)
2b: CATH_1bbrN02 (N:28-120,N:233-247)
2c: CATH_1bbrK01 (K:16-27,K:121-232)
2d: CATH_1bbrN01 (N:16-27,N:121-232)
2e: CATH_1bbrE00 (E:149B-247)
2f: CATH_1bbrH00 (H:16-149A)
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)
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)
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(
)
(
)
Organisms
(
)
(
)
Class
:
Few Secondary Structures
(1120)
Architecture
:
Irregular
(1120)
Topology
:
Epsilon-Thrombin; Chain L
(37)
Homologous Superfamily
:
Epsilon-Thrombin, subunit L
(37)
Cattle (Bos taurus)
(17)
1a
1bbrJ00
J:1H-15
1b
1bbrL00
L:1H-15
1c
1bbrM00
M:1H-15
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Thrombin, subunit H
(1535)
Homologous Superfamily
:
Trypsin-like serine proteases
(1488)
Cattle (Bos taurus)
(308)
2a
1bbrK02
K:28-120,K:233-247
2b
1bbrN02
N:28-120,N:233-247
2c
1bbrK01
K:16-27,K:121-232
2d
1bbrN01
N:16-27,N:121-232
2e
1bbrE00
E:149B-247
2f
1bbrH00
H:16-149A
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (169 KB)
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