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1BBR
Asym. Unit
Info
Asym.Unit (169 KB)
Biol.Unit 1 (57 KB)
Biol.Unit 2 (56 KB)
Biol.Unit 3 (56 KB)
Biol.Unit 4 (111 KB)
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(1)
Title
:
THE STRUCTURE OF RESIDUES 7-16 OF THE A ALPHA CHAIN OF HUMAN FIBRINOGEN BOUND TO BOVINE THROMBIN AT 2.3 ANGSTROMS RESOLUTION
Authors
:
P. Martin, B. Edwards
Date
:
27 Apr 92 (Deposition) - 31 Jan 94 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : E,F,G,H,I,J,K,L,M,N
Biol. Unit 1: E,F,H,L (1x)
Biol. Unit 2: G,J,K (1x)
Biol. Unit 3: I,M,N (1x)
Biol. Unit 4: G,I,J,K,M,N (1x)
Keywords
:
Serine Protease
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. D. Martin, W. Robertson, D. Turk, R. Huber, W. Bode, B. F. Edwards
The Structure Of Residues 7-16 Of The A Alpha-Chain Of Human Fibrinogen Bound To Bovine Thrombin At 2. 3-A Resolution.
J. Biol. Chem. V. 267 7911 1992
(for further references see the
PDB file header
)
[
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Hetero Components
(1, 3)
Info
All Hetero Components
1a: ACETYL GROUP (ACEa)
1b: ACETYL GROUP (ACEb)
1c: ACETYL GROUP (ACEc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACE
3
Mod. Amino Acid
ACETYL GROUP
[
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]
Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
[
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]
SAPs(SNPs)/Variants
(5, 15)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_THRB_BOVIN_001 (D222N, chain E/K/N, )
2: VAR_002390 (D309N, chain F/G/I, )
3: VAR_002391 (G314V, chain F/G/I, )
4: VAR_002392 (R318C, chain F/G/I, )
5: VAR_002393 (R318H, chain F/G/I, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_THRB_BOVIN_001
*
D
600
N
THRB_BOVIN
---
---
E/K/N
D
222
N
2
UniProt
VAR_002390
D
26
N
FIBA_HUMAN
Unclassified
---
F/G/I
D
309
N
3
UniProt
VAR_002391
G
31
V
FIBA_HUMAN
Unclassified
---
F/G/I
G
314
V
4
UniProt
VAR_002392
R
35
C
FIBA_HUMAN
Disease (DYSFIBRIN)
---
F/G/I
R
318
C
5
UniProt
VAR_002393
R
35
H
FIBA_HUMAN
Polymorphism
---
F/G/I
R
318
H
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(3, 9)
Info
All PROSITE Patterns/Profiles
1: TRYPSIN_DOM (H:16-149A,K:16-243,N:16-243)
2: TRYPSIN_HIS (H:53-58,K:53-58,N:53-58)
3: TRYPSIN_SER (E:189-200,K:189-200,N:189-200)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TRYPSIN_DOM
PS50240
Serine proteases, trypsin domain profile.
THRB_BOVIN
367-621
3
H:16-149A
K:16-243
N:16-243
2
TRYPSIN_HIS
PS00134
Serine proteases, trypsin family, histidine active site.
THRB_BOVIN
405-410
3
H:53-58
K:53-58
N:53-58
3
TRYPSIN_SER
PS00135
Serine proteases, trypsin family, serine active site.
THRB_BOVIN
565-576
3
E:189-200
K:189-200
N:189-200
[
close PROSITE info
]
Exons
(8, 28)
Info
All Exons
Exon 1.8 (- | - | J:1H-1A | - | L:1H-1A | M:...)
Exon 1.9 (- | H:16-29 | J:1A-15 | K:16-29 | ...)
Exon 1.10 (- | H:29-75 | - | K:29-75 | - | - ...)
Exon 1.11 (- | H:75-129B | - | K:75-129B | - ...)
Exon 1.12 (E:149B-184 | H:129B-149A | - | K:1...)
Exon 1.13 (E:184-202 | - | - | K:184-202 | - ...)
Exon 1.14 (E:203-247 (gaps) | - | - | K:203-2...)
Exon 2.2 (F:308-318 | G:308-318 | I:308-318)
View:
Select:
Label:
All Exon Boundaries
01: Boundary 1.7/1.8
02: Boundary 1.8/1.9
03: Boundary 1.9/1.10
04: Boundary 1.10/1.11
05: Boundary 1.11/1.12
06: Boundary 1.12/1.13
07: Boundary 1.13/1.14
08: Boundary 1.14/-
09: Boundary 2.1a/2.2
10: Boundary 2.2/2.3
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSBTAT00000009406
1
ENSBTAE00000076598
chr15:
77004894-77005007
114
THRB_BOVIN
1-27
27
0
-
-
1.2
ENSBTAT00000009406
2
ENSBTAE00000076606
chr15:
77005352-77005515
164
THRB_BOVIN
27-81
55
0
-
-
1.3
ENSBTAT00000009406
3
ENSBTAE00000306249
chr15:
77006130-77006154
25
THRB_BOVIN
82-90
9
0
-
-
1.4
ENSBTAT00000009406
4
ENSBTAE00000076608
chr15:
77006384-77006434
51
THRB_BOVIN
90-107
18
0
-
-
1.5
ENSBTAT00000009406
5
ENSBTAE00000076609
chr15:
77007812-77007917
106
THRB_BOVIN
107-142
36
0
-
-
1.6
ENSBTAT00000009406
6
ENSBTAE00000076610
chr15:
77008015-77008151
137
THRB_BOVIN
142-188
47
0
-
-
1.7
ENSBTAT00000009406
7
ENSBTAE00000076611
chr15:
77009362-77009676
315
THRB_BOVIN
188-293
106
0
-
-
1.8
ENSBTAT00000009406
8
ENSBTAE00000076614
chr15:
77009972-77010106
135
THRB_BOVIN
293-338
46
3
-
-
J:1H-1A
-
L:1H-1A
M:1H-1A
-
-
-
8
-
8
8
-
1.9
ENSBTAT00000009406
9
ENSBTAE00000076615
chr15:
77010182-77010308
127
THRB_BOVIN
338-380
43
6
-
H:16-29
J:1A-15
K:16-29
L:1A-15
M:1A-15
N:16-29
-
14
29
14
29
29
14
1.10
ENSBTAT00000009406
10
ENSBTAE00000076616
chr15:
77011290-77011457
168
THRB_BOVIN
380-436
57
3
-
H:29-75
-
K:29-75
-
-
N:29-75
-
57
-
57
-
-
57
1.11
ENSBTAT00000009406
11
ENSBTAE00000076617
chr15:
77011956-77012129
174
THRB_BOVIN
436-494
59
3
-
H:75-129B
-
K:75-129B
-
-
N:75-129B
-
59
-
59
-
-
59
1.12
ENSBTAT00000009406
12
ENSBTAE00000306240
chr15:
77012378-77012559
182
THRB_BOVIN
494-555
62
4
E:149B-184
H:129B-149A
-
K:129B-184
-
-
N:129B-184
39
23
-
62
-
-
62
1.13
ENSBTAT00000009406
13
ENSBTAE00000076620
chr15:
77018853-77018923
71
THRB_BOVIN
555-578
24
3
E:184-202
-
-
K:184-202
-
-
N:184-202
24
-
-
24
-
-
24
1.14
ENSBTAT00000009406
14
ENSBTAE00000076621
chr15:
77019058-77019320
263
THRB_BOVIN
579-625
47
3
E:203-247 (gaps)
-
-
K:203-247 (gaps)
-
-
N:203-247 (gaps)
48
-
-
48
-
-
48
2.1a
ENST00000302053
1a
ENSE00001909776
chr4:
155511918-155511786
133
FIBA_HUMAN
1-18
18
0
-
-
2.2
ENST00000302053
2
ENSE00001127292
chr4:
155510714-155510589
126
FIBA_HUMAN
19-60
42
3
F:308-318
G:308-318
I:308-318
11
11
11
2.3
ENST00000302053
3
ENSE00001127283
chr4:
155510128-155509945
184
FIBA_HUMAN
61-122
62
0
-
-
2.4b
ENST00000302053
4b
ENSE00001127274
chr4:
155508809-155508664
146
FIBA_HUMAN
122-170
49
0
-
-
2.5b
ENST00000302053
5b
ENSE00001127263
chr4:
155508070-155506690
1381
FIBA_HUMAN
171-631
461
0
-
-
2.6
ENST00000302053
6
ENSE00001210975
chr4:
155505985-155504278
1708
FIBA_HUMAN
631-866
236
0
-
-
[
close EXON info
]
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d1bbr_1 (L:,H:,E:)
1b: SCOP_d1bbr_2 (J:,K:)
1c: SCOP_d1bbr_3 (M:,N:)
View:
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(
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(
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)
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)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Trypsin-like serine proteases
(1752)
Superfamily
:
Trypsin-like serine proteases
(1752)
Family
:
Eukaryotic proteases
(1343)
Protein domain
:
Thrombin
(188)
Cow (Bos taurus) [TaxId: 9913]
(19)
1a
d1bbr.1
L:,H:,E:
1b
d1bbr.2
J:,K:
1c
d1bbr.3
M:,N:
[
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CATH Domains
(2, 9)
Info
all CATH domains
1a: CATH_1bbrJ00 (J:1H-15)
1b: CATH_1bbrL00 (L:1H-15)
1c: CATH_1bbrM00 (M:1H-15)
2a: CATH_1bbrK02 (K:28-120,K:233-247)
2b: CATH_1bbrN02 (N:28-120,N:233-247)
2c: CATH_1bbrK01 (K:16-27,K:121-232)
2d: CATH_1bbrN01 (N:16-27,N:121-232)
2e: CATH_1bbrE00 (E:149B-247)
2f: CATH_1bbrH00 (H:16-149A)
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)
(
)
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(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Few Secondary Structures
(1120)
Architecture
:
Irregular
(1120)
Topology
:
Epsilon-Thrombin; Chain L
(37)
Homologous Superfamily
:
Epsilon-Thrombin, subunit L
(37)
Cattle (Bos taurus)
(17)
1a
1bbrJ00
J:1H-15
1b
1bbrL00
L:1H-15
1c
1bbrM00
M:1H-15
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Thrombin, subunit H
(1535)
Homologous Superfamily
:
Trypsin-like serine proteases
(1488)
Cattle (Bos taurus)
(308)
2a
1bbrK02
K:28-120,K:233-247
2b
1bbrN02
N:28-120,N:233-247
2c
1bbrK01
K:16-27,K:121-232
2d
1bbrN01
N:16-27,N:121-232
2e
1bbrE00
E:149B-247
2f
1bbrH00
H:16-149A
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Asym.Unit (169 KB)
Header - Asym.Unit
Biol.Unit 1 (57 KB)
Header - Biol.Unit 1
Biol.Unit 2 (56 KB)
Header - Biol.Unit 2
Biol.Unit 3 (56 KB)
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