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1B9Y
Asym. Unit
Info
Asym.Unit (93 KB)
Biol.Unit 1 (87 KB)
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(1)
Title
:
STRUCTURAL ANALYSIS OF PHOSDUCIN AND ITS PHOSPHORYLATION-REGULATED INTERACTION WITH TRANSDUCIN BETA-GAMMA
Authors
:
R. Gaudet, P. B. Sigler
Date
:
16 Feb 99 (Deposition) - 23 Feb 99 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Keywords
:
Phosducin, Transducin, Beta-Gamma, Signal Transduction, Regulation, Phosphorylation, G Proteins, Thioredoxin, Vision, Meka, Complex (Transducer/ Transduction), Signaling Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Gaudet, J. R. Savage, J. N. Mclaughlin, B. M. Willardson, P. B. Sigler
A Molecular Mechanism For The Phosphorylation-Dependent Regulation Of Heterotrimeric G Proteins By Phosducin.
Mol. Cell V. 3 649 1999
(for further references see the
PDB file header
)
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Hetero Components
(1, 6)
Info
All Hetero Components
1a: GADOLINIUM ATOM (GDa)
1b: GADOLINIUM ATOM (GDb)
1c: GADOLINIUM ATOM (GDc)
1d: GADOLINIUM ATOM (GDd)
1e: GADOLINIUM ATOM (GDe)
1f: GADOLINIUM ATOM (GDf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GD
6
Ligand/Ion
GADOLINIUM ATOM
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HOH B:1 , HOH B:18 , ASP B:542 , GLU B:546
BINDING SITE FOR RESIDUE GD B 101
2
AC2
SOFTWARE
GLU C:161 , GLU C:218 , HOH C:249 , HOH C:250 , HOH C:253
BINDING SITE FOR RESIDUE GD C 247
3
AC3
SOFTWARE
GLN A:44 , HOH A:345 , HOH C:255
BINDING SITE FOR RESIDUE GD A 341
4
AC4
SOFTWARE
HOH B:10 , HOH B:19 , ASP B:542 , GLU B:546 , GLU C:206
BINDING SITE FOR RESIDUE GD B 104
5
AC5
SOFTWARE
GLU B:566 , GLU C:223
BINDING SITE FOR RESIDUE GD C 248
6
AC6
SOFTWARE
CYS A:204 , ASP A:228
BINDING SITE FOR RESIDUE GD A 342
[
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_PHOS_RAT_001 (V191I, chain C, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_PHOS_RAT_001
*
V
191
I
PHOS_RAT
---
---
C
V
191
I
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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]
PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: G_PROTEIN_GAMMA (B:505-568)
2: WD_REPEATS_1 (A:70-84|A:157-171|A:285-299)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
G_PROTEIN_GAMMA
PS50058
G-protein gamma subunit domain profile.
GBG1_BOVIN
5-74
1
B:505-568
2
WD_REPEATS_1
PS00678
Trp-Asp (WD) repeats signature.
GBB1_BOVIN
70-84
157-171
285-299
3
A:70-84
A:157-171
A:285-299
[
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Exons
(14, 14)
Info
All Exons
Exon 1.1c (B:501-532)
Exon 1.2 (B:533-568)
Exon 2.3 (A:1-19)
Exon 2.4 (A:20-32)
Exon 2.5 (A:33-68)
Exon 2.6 (A:68-89)
Exon 2.7 (A:90-144)
Exon 2.8 (A:144-166)
Exon 2.9 (A:166-233)
Exon 2.10 (A:234-306)
Exon 2.11 (A:306-340)
Exon 3.2 (C:14-21)
Exon 3.3 (C:21-37)
Exon 3.4 (C:88-230)
View:
Select:
Label:
All Exon Boundaries
01: Boundary 1.1b/1.1c
02: Boundary 1.1c/1.2
03: Boundary 1.2/-
04: Boundary 2.1/2.3
05: Boundary 2.3/2.4
06: Boundary 2.4/2.5
07: Boundary 2.5/2.6
08: Boundary 2.6/2.7
09: Boundary 2.7/2.8
10: Boundary 2.8/2.9
11: Boundary 2.9/2.10
12: Boundary 2.10/2.11
13: Boundary 2.11/2.12b
14: Boundary 3.1/3.2
15: Boundary 3.2/3.3
16: Boundary 3.3/3.4
17: Boundary 3.4/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENSBTAT00000003465
1b
ENSBTAE00000365422
chr4:
11462618-11462677
60
GBG1_BOVIN
-
0
0
-
-
1.1c
ENSBTAT00000003465
1c
ENSBTAE00000276323
chr4:
11462769-11462871
103
GBG1_BOVIN
1-32
32
1
B:501-532
32
1.2
ENSBTAT00000003465
2
ENSBTAE00000027869
chr4:
11468951-11469221
271
GBG1_BOVIN
33-74
42
1
B:533-568
36
2.1
ENSBTAT00000045065
1
ENSBTAE00000334067
chr16:
48127959-48128171
213
GBB1_BOVIN
-
0
0
-
-
2.3
ENSBTAT00000045065
3
ENSBTAE00000002006
chr16:
48183972-48184074
103
GBB1_BOVIN
1-19
19
1
A:1-19
19
2.4
ENSBTAT00000045065
4
ENSBTAE00000002007
chr16:
48187973-48188011
39
GBB1_BOVIN
20-32
13
1
A:20-32
13
2.5
ENSBTAT00000045065
5
ENSBTAE00000376692
chr16:
48189546-48189652
107
GBB1_BOVIN
33-68
36
1
A:33-68
36
2.6
ENSBTAT00000045065
6
ENSBTAE00000386769
chr16:
48193508-48193571
64
GBB1_BOVIN
68-89
22
1
A:68-89
22
2.7
ENSBTAT00000045065
7
ENSBTAE00000002010
chr16:
48194640-48194802
163
GBB1_BOVIN
90-144
55
1
A:90-144
55
2.8
ENSBTAT00000045065
8
ENSBTAE00000394803
chr16:
48200709-48200775
67
GBB1_BOVIN
144-166
23
1
A:144-166
23
2.9
ENSBTAT00000045065
9
ENSBTAE00000002012
chr16:
48202132-48202333
202
GBB1_BOVIN
166-233
68
1
A:166-233
68
2.10
ENSBTAT00000045065
10
ENSBTAE00000388531
chr16:
48203047-48203263
217
GBB1_BOVIN
234-306
73
1
A:234-306
73
2.11
ENSBTAT00000045065
11
ENSBTAE00000002014
chr16:
48203934-48204049
116
GBB1_BOVIN
306-340
35
1
A:306-340
35
2.12b
ENSBTAT00000045065
12b
ENSBTAE00000334058
chr16:
48204269-48205916
1648
GBB1_BOVIN
-
0
0
-
-
3.1
ENSRNOT00000003405
1
ENSRNOE00000024002
chr13:
64622463-64622529
67
PHOS_RAT
-
0
0
-
-
3.2
ENSRNOT00000003405
2
ENSRNOE00000024011
chr13:
64629518-64629602
85
PHOS_RAT
1-21
21
1
C:14-21
8
3.3
ENSRNOT00000003405
3
ENSRNOE00000024038
chr13:
64632854-64633005
152
PHOS_RAT
21-71
51
1
C:21-37
17
3.4
ENSRNOT00000003405
4
ENSRNOE00000024054
chr13:
64635054-64635970
917
PHOS_RAT
72-246
175
1
C:88-230
143
[
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]
SCOP Domains
(3, 3)
Info
All SCOP Domains
1a: SCOP_d1b9yb_ (B:)
2a: SCOP_d1b9ya_ (A:)
3a: SCOP_d1b9yc_ (C:)
View:
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)
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Folds
(
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)
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)
Families
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Non-globular all-alpha subunits of globular proteins
(135)
Superfamily
:
Transducin (heterotrimeric G protein), gamma chain
(19)
Family
:
Transducin (heterotrimeric G protein), gamma chain
(19)
Protein domain
:
Transducin (heterotrimeric G protein), gamma chain
(19)
Cow (Bos taurus) [TaxId: 9913]
(19)
1a
d1b9yb_
B:
Class
:
All beta proteins
(24004)
Fold
:
7-bladed beta-propeller
(245)
Superfamily
:
WD40 repeat-like
(95)
Family
:
WD40-repeat
(53)
Protein domain
:
beta1-subunit of the signal-transducing G protein heterotrimer
(19)
Cow (Bos taurus) [TaxId: 9913]
(19)
2a
d1b9ya_
A:
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Thioredoxin fold
(994)
Superfamily
:
Thioredoxin-like
(992)
Family
:
Phosducin
(4)
Protein domain
:
Phosducin
(4)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(3)
3a
d1b9yc_
C:
[
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CATH Domains
(4, 4)
Info
all CATH domains
1a: CATH_1b9yC01 (C:97-225)
2a: CATH_1b9yB00 (B:501-568)
3a: CATH_1b9yC02 (C:14-96)
4a: CATH_1b9yA00 (A:1-340)
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)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Glutaredoxin
(620)
Homologous Superfamily
:
Glutaredoxin
(617)
Cattle (Bos taurus)
(5)
1a
1b9yC01
C:97-225
Class
:
Few Secondary Structures
(1120)
Architecture
:
Irregular
(1120)
Topology
:
G Protein Gi Gamma 2
(12)
Homologous Superfamily
:
[code=4.10.260.10, no name defined]
(10)
Cattle (Bos taurus)
(7)
2a
1b9yB00
B:501-568
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Phosducin; domain 2
(4)
Homologous Superfamily
:
Phosducin, domain 2
(4)
Cattle (Bos taurus)
(4)
3a
1b9yC02
C:14-96
Class
:
Mainly Beta
(13760)
Architecture
:
7 Propellor
(136)
Topology
:
Methylamine Dehydrogenase; Chain H
(136)
Homologous Superfamily
:
YVTN repeat-like/Quinoprotein amine dehydrogenase
(76)
Cattle (Bos taurus)
(18)
4a
1b9yA00
A:1-340
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Label:
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Chain C
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