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Getting 'Exon' information from database.
1B9O
Asym. Unit
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Asym.Unit (29 KB)
Biol.Unit 1 (25 KB)
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(1)
Title
:
HUMAN ALPHA-LACTALBUMIN, LOW TEMPERATURE FORM
Authors
:
K. Harata, Y. Abe, M. Muraki
Date
:
14 Feb 99 (Deposition) - 31 Mar 99 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.15
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Calcium-Binding Protein, High Resolution
(Keyword Search:
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)
Reference
:
K. Harata, Y. Abe, M. Muraki
Crystallographic Evaluation Of Internal Motion Of Human Alpha-Lactalbumin Refined By Full-Matrix Least-Squares Method.
J. Mol. Biol. V. 287 347 1999
(for further references see the
PDB file header
)
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
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Label:
No.
Name
Count
Type
Full Name
1
CA
1
Ligand/Ion
CALCIUM ION
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LYS A:79 , ASP A:82 , ASP A:84 , ASP A:87 , ASP A:88 , HOH A:125 , HOH A:126
BINDING SITE FOR RESIDUE CA A 124
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_024526 (I27V, chain A, )
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_024526
I
46
V
LALBA_HUMAN
Polymorphism
2232565
A
I
27
V
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: LACTALBUMIN_LYSOZYME_2 (A:1-123)
2: LACTALBUMIN_LYSOZYME_1 (A:73-91)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
LACTALBUMIN_LYSOZYME_2
PS51348
Alpha-lactalbumin / lysozyme C family profile.
LALBA_HUMAN
20-142
1
A:1-123
2
LACTALBUMIN_LYSOZYME_1
PS00128
Alpha-lactalbumin / lysozyme C signature.
LALBA_HUMAN
92-110
1
A:73-91
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Exons
(4, 4)
Info
All Exons
Exon 1.1 (A:1-26)
Exon 1.2 (A:26-79)
Exon 1.3 (A:79-104)
Exon 1.4 (A:104-123)
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/1.4
5: Boundary 1.4/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000301046
1
ENSE00001113957
chr12:
48963829-48963671
159
LALBA_HUMAN
1-45
45
1
A:1-26
26
1.2
ENST00000301046
2
ENSE00001113961
chr12:
48963023-48962865
159
LALBA_HUMAN
45-98
54
1
A:26-79
54
1.3
ENST00000301046
3
ENSE00001113959
chr12:
48962375-48962300
76
LALBA_HUMAN
98-123
26
1
A:79-104
26
1.4
ENST00000301046
4
ENSE00001113958
chr12:
48961800-48961468
333
LALBA_HUMAN
123-142
20
1
A:104-123
20
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1b9oa_ (A:)
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Lysozyme-like
(1361)
Superfamily
:
Lysozyme-like
(1361)
Family
:
C-type lysozyme
(738)
Protein domain
:
alpha-Lactalbumin
(25)
Human (Homo sapiens) [TaxId: 9606]
(3)
1a
d1b9oa_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1b9oA00 (A:1-123)
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)
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Organisms
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)
(
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Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Lysozyme
(1131)
Homologous Superfamily
:
[code=1.10.530.10, no name defined]
(605)
Human (Homo sapiens)
(206)
1a
1b9oA00
A:1-123
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Chain A
Asymmetric Unit 1
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