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1B8Y
Biol. Unit 1
Info
Asym.Unit (36 KB)
Biol.Unit 1 (31 KB)
Biol.Unit 2 (60 KB)
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(1)
Title
:
X-RAY STRUCTURE OF HUMAN STROMELYSIN CATALYTIC DOMAIN COMPLEXED WITH NON-PEPTIDE INHIBITORS: IMPLICATIONS FOR INHIBITOR SELECTIVITY
Authors
:
A. G. Pavlovsky, M. G. Williams, Q. -Z. Ye, D. F. Ortwine, C. F. Purchase A. D. White, V. Dhanaraj, B. D. Roth, L. L. Johnson, D. Hupe, C. Humblet, T. L. Blundell
Date
:
03 Feb 99 (Deposition) - 31 Aug 99 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Biol. Unit 2: A (2x)
Keywords
:
Hydrolase, Matrix Metalloproteinase-3, Stromelysin-1
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. G. Pavlovsky, M. G. Williams, Q. Z. Ye, D. F. Ortwine, C. F. Purchase 2Nd. , A. D. White, V. Dhanaraj, B. D. Roth, L. L. Johnson D. Hupe, C. Humblet, T. L. Blundell
X-Ray Structure Of Human Stromelysin Catalytic Domain Complexed With Nonpeptide Inhibitors: Implications For Inhibitor Selectivity.
Protein Sci. V. 8 1455 1999
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
2a: [4-(4-PHENYL-PIPERIDIN-1-YL)-BENZE... (IN7a)
3a: SULFATE ION (SO4a)
4a: ZINC ION (ZNa)
4b: ZINC ION (ZNb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CA
-1
Ligand/Ion
CALCIUM ION
2
IN7
1
Ligand/Ion
[4-(4-PHENYL-PIPERIDIN-1-YL)-BENZENESULFONYLAMINO]-ACETIC ACID
3
SO4
1
Ligand/Ion
SULFATE ION
4
ZN
-1
Ligand/Ion
ZINC ION
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Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: CA1 (AUTHOR)
09: CA2 (AUTHOR)
10: CA3 (AUTHOR)
11: IN7 (AUTHOR)
12: ZN1 (AUTHOR)
13: ZN2 (AUTHOR)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:201 , HIS A:205 , HIS A:211 , IN7 A:502
BINDING SITE FOR RESIDUE ZN A 301
02
AC2
SOFTWARE
HIS A:151 , ASP A:153 , HIS A:166 , HIS A:179
BINDING SITE FOR RESIDUE ZN A 302
03
AC3
SOFTWARE
ASP A:158 , GLY A:159 , GLY A:161 , VAL A:163 , ASP A:181 , GLU A:184
BINDING SITE FOR RESIDUE CA A 303
04
AC4
SOFTWARE
ASP A:141 , GLY A:173 , ASN A:175 , ASP A:177 , HOH A:403 , HOH A:404
BINDING SITE FOR RESIDUE CA A 304
05
AC5
SOFTWARE
ASP A:107 , ASP A:182 , GLU A:184 , HOH A:401
BINDING SITE FOR RESIDUE CA A 305
06
AC6
SOFTWARE
PRO A:109 , LYS A:110 , HOH A:444
BINDING SITE FOR RESIDUE SO4 A 501
07
AC7
SOFTWARE
LEU A:164 , ALA A:165 , HIS A:201 , GLU A:202 , HIS A:211 , ALA A:217 , LEU A:218 , TYR A:220 , PRO A:221 , LEU A:222 , TYR A:223 , HIS A:224 , ZN A:301 , HOH A:406
BINDING SITE FOR RESIDUE IN7 A 502
08
CA1
AUTHOR
ASP A:158 , GLY A:159 , GLY A:161 , VAL A:163 , ASP A:181 , GLU A:184
CA1 IS THE FIRST CALCIUM BINDING SITE OF CA 303.
09
CA2
AUTHOR
ASP A:141 , GLY A:173 , ASN A:175 , ASP A:177 , HOH A:403 , HOH A:404
CA2 IS THE SECOND CALCIUM BINDING SITE OF CA 304.
10
CA3
AUTHOR
ASP A:107 , ASP A:182 , GLU A:184 , HOH A:401
CA3 IS THE THIRD CALCIUM BINDING SITE OF CA 305.
11
IN7
AUTHOR
IN7 A:502
IN7 IS THE BINDING SITE FOR THE DIPHENYLPIPERIDINE SULFONAMIDE INHIBITOR.
12
ZN1
AUTHOR
HIS A:201 , HIS A:205 , HIS A:211 , IN7 A:502
ZN1 IS THE CATALYTIC ZINC BINDING SITE OF ZN 301.
13
ZN2
AUTHOR
HIS A:151 , ASP A:153 , HIS A:166 , HIS A:179
ZN2 IS THE STRUCTURAL ZINC BINDING SITE OF ZN 302.
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: ZINC_PROTEASE (A:198-207)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ZINC_PROTEASE
PS00142
Neutral zinc metallopeptidases, zinc-binding region signature.
MMP3_HUMAN
215-224
1
A:198-207
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1b8ya_ (A:)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Zincin-like
(701)
Superfamily
:
Metalloproteases (zincins), catalytic domain
(647)
Family
:
Matrix metalloproteases, catalytic domain
(199)
Protein domain
:
Stromelysin-1 (MMP-3)
(40)
Human (Homo sapiens), fibroblast [TaxId: 9606]
(40)
1a
d1b8ya_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1b8yA00 (A:83-249)
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Collagenase (Catalytic Domain)
(236)
Homologous Superfamily
:
Collagenase (Catalytic Domain)
(234)
Human (Homo sapiens)
(153)
1a
1b8yA00
A:83-249
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Pfam Domains
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Chain A
Asymmetric Unit 1
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