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1B8O
Asym. Unit
Info
Asym.Unit (54 KB)
Biol.Unit 1 (50 KB)
Biol.Unit 2 (146 KB)
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(1)
Title
:
PURINE NUCLEOSIDE PHOSPHORYLASE
Authors
:
A. A. Fedorov, G. A. Kicska, E. V. Fedorov, W. Shi, P. C. Tyler, R. H. Furne V. L. Schramm, S. C. Almo
Date
:
02 Feb 99 (Deposition) - 08 Feb 99 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.50
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Biol. Unit 2: A (3x)
Keywords
:
Pentosyltransferase, Purine Nucleoside Phosphorylase, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Fedorov, W. Shi, G. Kicska, E. Fedorov, P. C. Tyler, R. H. Furneaux, J. C. Hanson, G. J. Gainsford, J. Z. Larese, V. L. Schramm, S. C. Almo
Transition State Structure Of Purine Nucleoside Phosphorylase And Principles Of Atomic Motion In Enzymatic Catalysis.
Biochemistry V. 40 853 2001
(for further references see the
PDB file header
)
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Hetero Components
(3, 3)
Info
All Hetero Components
1a: 1,4-DIDEOXY-4-AZA-1-(S)-(9-DEAZAHY... (IMHa)
2a: MAGNESIUM ION (MGa)
3a: PHOSPHATE ION (PO4a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
IMH
1
Ligand/Ion
1,4-DIDEOXY-4-AZA-1-(S)-(9-DEAZAHYPOXANTHIN-9-YL)-D-RIBITOL
2
MG
1
Ligand/Ion
MAGNESIUM ION
3
PO4
1
Ligand/Ion
PHOSPHATE ION
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HOH A:319 , HOH A:326 , HOH A:328 , HOH A:329 , HOH A:342 , HOH A:348
BINDING SITE FOR RESIDUE MG A 598
2
AC2
SOFTWARE
GLY A:32 , SER A:33 , HIS A:64 , ARG A:84 , HIS A:86 , ASN A:115 , ALA A:116 , SER A:220 , HOH A:306 , IMH A:600
BINDING SITE FOR RESIDUE PO4 A 599
3
AC3
SOFTWARE
HIS A:86 , TYR A:88 , ALA A:116 , ALA A:117 , GLY A:118 , PHE A:200 , GLU A:201 , GLY A:218 , MET A:219 , THR A:242 , ASN A:243 , VAL A:245 , HIS A:257 , VAL A:260 , HOH A:320 , PO4 A:599
BINDING SITE FOR RESIDUE IMH A 600
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: PNP_MTAP_2 (A:79-120)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PNP_MTAP_2
PS01240
Purine and other phosphorylases family 2 signature.
PNPH_BOVIN
79-120
1
A:79-120
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Exons
(6, 6)
Info
All Exons
Exon 1.1 (A:3-33)
Exon 1.3 (A:33-90)
Exon 1.4 (A:90-124)
Exon 1.5 (A:125-183)
Exon 1.6 (A:183-247)
Exon 1.7 (A:247-282)
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/1.3
3: Boundary 1.3/1.4
4: Boundary 1.4/1.5
5: Boundary 1.5/1.6
6: Boundary 1.6/1.7
7: Boundary 1.7/-
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSBTAT00000016346
1
ENSBTAE00000133169
chr10:
26040769-26040670
100
PNPH_BOVIN
1-33
33
1
A:3-33
31
1.3
ENSBTAT00000016346
3
ENSBTAE00000420054
chr10:
26038796-26038627
170
PNPH_BOVIN
33-90
58
1
A:33-90
58
1.4
ENSBTAT00000016346
4
ENSBTAE00000408817
chr10:
26036665-26036562
104
PNPH_BOVIN
90-124
35
1
A:90-124
35
1.5
ENSBTAT00000016346
5
ENSBTAE00000427656
chr10:
26036357-26036182
176
PNPH_BOVIN
125-183
59
1
A:125-183
59
1.6
ENSBTAT00000016346
6
ENSBTAE00000404946
chr10:
26036090-26035900
191
PNPH_BOVIN
183-247
65
1
A:183-247
65
1.7
ENSBTAT00000016346
7
ENSBTAE00000133178
chr10:
26035106-26034471
636
PNPH_BOVIN
247-318
72
1
A:247-282
36
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1b8oa_ (A:)
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Phosphorylase/hydrolase-like
(558)
Superfamily
:
Purine and uridine phosphorylases
(283)
Family
:
Purine and uridine phosphorylases
(224)
Protein domain
:
Purine nucleoside phosphorylase, PNP
(93)
Cow (Bos taurus) [TaxId: 9913]
(20)
1a
d1b8oa_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1b8oA00 (A:3-282)
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Organisms
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)
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.1580, no name defined]
(194)
Cattle (Bos taurus)
(20)
1a
1b8oA00
A:3-282
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Pfam Domains
(0, 0)
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all PFAM domains
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Chain A
Asymmetric Unit 1
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Asym.Unit (54 KB)
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