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1B85
Asym. Unit
Info
Asym.Unit (126 KB)
Biol.Unit 1 (63 KB)
Biol.Unit 2 (62 KB)
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(1)
Title
:
LIGNIN PEROXIDASE
Authors
:
W. Blodig, W. A. Doyle, A. T. Smith, K. Piontek
Date
:
05 Feb 99 (Deposition) - 16 Feb 99 (Release) - 23 Feb 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.85
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Lignin Degradation, Heme, Radical Reaction, Electron Transfer, Oxidoreductase, Calcium, Cleavage On Pair Of Basic Residues, Disulfide Bond, Glycoprotein, Hydrogen Peroxide, Iron, Metal-Binding, Peroxidase, Zymogen
(Keyword Search:
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Reference
:
W. Blodig, A. T. Smith, W. A. Doyle, K. Piontek
Crystal Structures Of Pristine And Oxidatively Processed Lignin Peroxidase Expressed In Escherichia Coli And Of The W171F Variant That Eliminates The Redox Active Tryptophan 171. Implications For The Reaction Mechanism.
J. Mol. Biol. V. 305 851 2001
(for further references see the
PDB file header
)
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Hetero Components
(2, 6)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
2a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
2b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
4
Ligand/Ion
CALCIUM ION
2
HEM
2
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:48 , GLY A:66 , ASP A:68 , SER A:70 , HOH A:458 , HOH A:565
BINDING SITE FOR RESIDUE CA A 1351
2
AC2
SOFTWARE
SER A:177 , ASP A:194 , THR A:196 , ILE A:199 , ASP A:201
BINDING SITE FOR RESIDUE CA A 1352
3
AC3
SOFTWARE
ASP B:48 , GLY B:66 , ASP B:68 , SER B:70 , HOH B:576 , HOH B:577
BINDING SITE FOR RESIDUE CA B 2351
4
AC4
SOFTWARE
SER B:177 , ASP B:194 , THR B:196 , ILE B:199 , ASP B:201
BINDING SITE FOR RESIDUE CA B 2352
5
AC5
SOFTWARE
HIS A:39 , GLU A:40 , ILE A:42 , ARG A:43 , PHE A:46 , ILE A:85 , GLU A:146 , MET A:172 , LEU A:173 , ALA A:175 , HIS A:176 , ALA A:179 , ALA A:180 , VAL A:181 , ASN A:182 , ASP A:183 , PHE A:193 , ILE A:235 , SER A:237 , HOH A:362 , HOH A:413 , HOH A:446 , HOH A:460 , HOH A:491
BINDING SITE FOR RESIDUE HEM A 350
6
AC6
SOFTWARE
HIS B:39 , GLU B:40 , ILE B:42 , ARG B:43 , PHE B:46 , ILE B:85 , GLU B:146 , MET B:172 , LEU B:173 , ALA B:175 , HIS B:176 , ALA B:179 , ALA B:180 , VAL B:181 , ASN B:182 , ASP B:183 , PHE B:193 , ILE B:235 , SER B:237 , HOH B:361 , HOH B:420 , HOH B:467 , HOH B:527 , HOH B:541
BINDING SITE FOR RESIDUE HEM B 350
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SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_LIG8_PHACH_002 (A114A, chain A/B, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_LIG8_PHACH_002
*
R
142
A
LIG8_PHACH
---
---
A/B
A
114
A
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: PEROXIDASE_2 (A:38-49,B:38-49)
2: PEROXIDASE_1 (A:168-178,B:168-178)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PEROXIDASE_2
PS00436
Peroxidases active site signature.
LIG8_PHACH
66-77
2
A:38-49
B:38-49
2
PEROXIDASE_1
PS00435
Peroxidases proximal heme-ligand signature.
LIG8_PHACH
196-206
2
A:168-178
B:168-178
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1b85a_ (A:)
1b: SCOP_d1b85b_ (B:)
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Protein Domains
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(
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Organisms
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(
)
Class
:
All alpha proteins
(14657)
Fold
:
Heme-dependent peroxidases
(402)
Superfamily
:
Heme-dependent peroxidases
(402)
Family
:
CCP-like
(292)
Protein domain
:
Fungal peroxidase (ligninase)
(28)
Basidomycetes fungus (Phanerochaete chrysosporium) [TaxId: 5306]
(9)
1a
d1b85a_
A:
1b
d1b85b_
B:
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1b85A01 (A:11-144,A:269-296)
1b: CATH_1b85B01 (B:11-144,B:269-296)
2a: CATH_1b85A02 (A:145-268,A:297-339)
2b: CATH_1b85B02 (B:145-268,B:297-339)
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Organisms
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(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Peroxidase; domain 1
(244)
Homologous Superfamily
:
[code=1.10.520.10, no name defined]
(241)
White-rot fungus (Phanerochaete chrysosporium)
(1)
1a
1b85A01
A:11-144,A:269-296
1b
1b85B01
B:11-144,B:269-296
Topology
:
Peroxidase; domain 2
(241)
Homologous Superfamily
:
Peroxidase, domain 2
(241)
White-rot fungus (Phanerochaete chrysosporium)
(1)
2a
1b85A02
A:145-268,A:297-339
2b
1b85B02
B:145-268,B:297-339
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (126 KB)
Header - Asym.Unit
Biol.Unit 1 (63 KB)
Header - Biol.Unit 1
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