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1B7G
Biol. Unit 1
Info
Asym.Unit (125 KB)
Biol.Unit 1 (120 KB)
Biol.Unit 2 (237 KB)
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(1)
Title
:
GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE
Authors
:
M. N. Isupov, J. A. Littlechild
Date
:
22 Jan 99 (Deposition) - 08 Oct 99 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.05
Chains
:
Asym. Unit : O,Q
Biol. Unit 1: O,Q (1x)
Biol. Unit 2: O,Q (2x)
Keywords
:
Archaea; Hyperthermophile; Gapdh; Hyperthermophilic Dehydrogenase, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. N. Isupov, T. M. Fleming, A. R. Dalby, G. S. Crowhurst, P. C. Bourne, J. A. Littlechild
Crystal Structure Of The Glyceraldehyde-3-Phosphate Dehydrogenase From The Hyperthermophilic Archaeon Sulfolobu Solfataricus.
J. Mol. Biol. V. 291 651 1999
(for further references see the
PDB file header
)
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Hetero Components
(1, 12)
Info
All Hetero Components
1a: SULFATE ION (SO4a)
1b: SULFATE ION (SO4b)
1c: SULFATE ION (SO4c)
1d: SULFATE ION (SO4d)
1e: SULFATE ION (SO4e)
1f: SULFATE ION (SO4f)
1g: SULFATE ION (SO4g)
1h: SULFATE ION (SO4h)
1i: SULFATE ION (SO4i)
1j: SULFATE ION (SO4j)
1k: SULFATE ION (SO4k)
1l: SULFATE ION (SO4l)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
SO4
12
Ligand/Ion
SULFATE ION
[
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]
Sites
(18, 18)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: CTO (AUTHOR)
14: CTQ (AUTHOR)
15: PIO (AUTHOR)
16: PIQ (AUTHOR)
17: PSO (AUTHOR)
18: PSQ (AUTHOR)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
SER O:138 , CYS O:139 , ASN O:140 , ARG O:166 , HIS O:192 , HIS O:193 , HOH O:617
BINDING SITE FOR RESIDUE SO4 O 601
02
AC2
SOFTWARE
SER Q:138 , CYS Q:139 , ASN Q:140 , ARG Q:166 , HIS Q:192 , HIS Q:193 , HOH Q:667
BINDING SITE FOR RESIDUE SO4 Q 602
03
AC3
SOFTWARE
ARG O:166 , ARG O:167 , HOH O:661 , HOH O:847
BINDING SITE FOR RESIDUE SO4 O 603
04
AC4
SOFTWARE
ARG Q:166 , ARG Q:167
BINDING SITE FOR RESIDUE SO4 Q 604
05
AC5
SOFTWARE
LYS O:33 , THR O:34 , SER O:35 , HOH O:777 , HOH O:894
BINDING SITE FOR RESIDUE SO4 O 605
06
AC6
SOFTWARE
LYS Q:33 , THR Q:34 , SER Q:35 , HOH Q:744 , HOH Q:745
BINDING SITE FOR RESIDUE SO4 Q 606
07
AC7
SOFTWARE
PRO O:186 , SER O:191 , HIS O:192 , HOH O:636 , HOH O:728 , HOH O:784 , HOH O:799
BINDING SITE FOR RESIDUE SO4 O 607
08
AC8
SOFTWARE
PRO Q:186 , SER Q:191 , HIS Q:192 , HOH Q:736 , HOH Q:792
BINDING SITE FOR RESIDUE SO4 Q 608
09
AC9
SOFTWARE
LYS O:131 , ARG Q:49 , PRO Q:66
BINDING SITE FOR RESIDUE SO4 Q 609
10
BC1
SOFTWARE
THR O:11 , LYS O:172 , GLU O:173 , HOH O:664 , HOH O:688
BINDING SITE FOR RESIDUE SO4 O 610
11
BC2
SOFTWARE
LYS O:111 , ALA O:112 , LYS O:195 , HOH O:645 , HOH O:675 , HOH O:762 , HOH O:839
BINDING SITE FOR RESIDUE SO4 O 611
12
BC3
SOFTWARE
GLY Q:10 , THR Q:11 , LYS Q:172 , HOH Q:640
BINDING SITE FOR RESIDUE SO4 Q 612
13
CTO
AUTHOR
CYS O:139 , HIS O:219
CATALYTIC SITE IN SUBUNIT O
14
CTQ
AUTHOR
CYS Q:139 , HIS Q:219
CATALYTIC SITE IN SUBUNIT Q
15
PIO
AUTHOR
SER O:138 , ASN O:140 , ARG O:166 , HIS O:192 , HIS O:193
INORGANIC PHOSPHATE BINDING SITE IN SUBUNIT Q
16
PIQ
AUTHOR
SER Q:138 , ASN Q:140 , ARG Q:166 , HIS Q:192 , HIS Q:193
INORGAINC PHOSPHATE BINDING SITE IN SUBUNIT Q
17
PSO
AUTHOR
ARG O:166 , ARG O:167
SUBSTRATE PHOSPHARE BINDING SITE IN SUBUNIT O
18
PSQ
AUTHOR
ARG Q:166 , ARG Q:167
SUBSTRATE PHOSPHATE BINDING SITE IN SUBUNIT Q
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: GAPDH (O:137-144,Q:137-144)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GAPDH
PS00071
Glyceraldehyde 3-phosphate dehydrogenase active site.
G3P_SULSO
137-144
2
O:137-144
Q:137-144
[
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Exons
(0, 0)
Info
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1b7go2 (O:139-300)
1b: SCOP_d1b7gq2 (Q:139-300)
2a: SCOP_d1b7go1 (O:1-138,O:301-340)
2b: SCOP_d1b7gq1 (Q:1-138,Q:301-340)
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Classes
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)
(
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(
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Superfamilies
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)
(
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Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
FwdE/GAPDH domain-like
(188)
Superfamily
:
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
(179)
Family
:
GAPDH-like
(99)
Protein domain
:
Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
(61)
Sulfolobus solfataricus [TaxId: 2287]
(1)
1a
d1b7go2
O:139-300
1b
d1b7gq2
Q:139-300
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
(179)
Protein domain
:
Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
(61)
Sulfolobus solfataricus [TaxId: 2287]
(1)
2a
d1b7go1
O:1-138,O:301-340
2b
d1b7gq1
Q:1-138,Q:301-340
[
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]
CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1b7gO02 (O:137-307,O:328-340)
1b: CATH_1b7gQ02 (Q:137-307,Q:328-340)
2a: CATH_1b7gO01 (O:1-136,O:308-327)
2b: CATH_1b7gQ01 (Q:1-136,Q:308-327)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Dihydrodipicolinate Reductase; domain 2
(182)
Homologous Superfamily
:
Dihydrodipicolinate Reductase; domain 2
(178)
Sulfolobus solfataricus. Organism_taxid: 2287.
(1)
1a
1b7gO02
O:137-307,O:328-340
1b
1b7gQ02
Q:137-307,Q:328-340
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
Sulfolobus solfataricus. Organism_taxid: 2287.
(6)
2a
1b7gO01
O:1-136,O:308-327
2b
1b7gQ01
Q:1-136,Q:308-327
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Atom Selection
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Chain O
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Asymmetric Unit 1
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Asym.Unit (125 KB)
Header - Asym.Unit
Biol.Unit 1 (120 KB)
Header - Biol.Unit 1
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