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1B6H
Asym. Unit
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Asym.Unit (102 KB)
Biol.Unit 1 (96 KB)
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(1)
Title
:
OLIGO-PEPTIDE BINDING PROTEIN COMPLEXED WITH LYSYL-NORVALYL-LYSINE
Authors
:
T. G. Davies, J. R. H. Tame
Date
:
13 Nov 98 (Deposition) - 18 Nov 98 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Periplasmic Peptide Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. G. Davies, R. E. Hubbard, J. R. Tame
Relating Structure To Thermodynamics: The Crystal Structures And Binding Affinity Of Eight Oppa-Peptide Complexes.
Protein Sci. V. 8 1432 1999
(for further references see the
PDB file header
)
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Hetero Components
(2, 9)
Info
All Hetero Components
1a: NORVALINE (NVAa)
2a: URANIUM ATOM (U1a)
2b: URANIUM ATOM (U1b)
2c: URANIUM ATOM (U1c)
2d: URANIUM ATOM (U1d)
2e: URANIUM ATOM (U1e)
2f: URANIUM ATOM (U1f)
2g: URANIUM ATOM (U1g)
2h: URANIUM ATOM (U1h)
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No.
Name
Count
Type
Full Name
1
NVA
1
Mod. Amino Acid
NORVALINE
2
U1
8
Ligand/Ion
URANIUM ATOM
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:323 , ASN A:394 , HOH A:535 , HOH A:677
BINDING SITE FOR RESIDUE U1 A 518
2
AC2
SOFTWARE
HOH A:527 , HOH A:556 , HOH A:614 , HOH A:639
BINDING SITE FOR RESIDUE U1 A 519
3
AC3
SOFTWARE
HOH A:578 , HOH A:701 , HOH A:722
BINDING SITE FOR RESIDUE U1 A 520
4
AC4
SOFTWARE
GLU A:251 , ASP A:369 , HOH A:735 , HOH A:807 , HOH A:813
BINDING SITE FOR RESIDUE U1 A 521
5
AC5
SOFTWARE
GLU A:53 , ASP A:362 , ASP A:410 , HOH A:676
BINDING SITE FOR RESIDUE U1 A 522
6
AC6
SOFTWARE
ASP A:133 , HIS A:517 , HOH A:530 , HOH A:580 , HOH A:590
BINDING SITE FOR RESIDUE U1 A 523
7
AC7
SOFTWARE
HOH A:1011
BINDING SITE FOR RESIDUE U1 A 524
8
AC8
SOFTWARE
ASP A:11 , GLU A:342 , HOH A:526 , HOH A:1050
BINDING SITE FOR RESIDUE U1 A 525
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: SBP_BACTERIAL_5 (A:61-82)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SBP_BACTERIAL_5
PS01040
Bacterial extracellular solute-binding proteins, family 5 signature.
OPPA_SALTY
87-108
1
A:61-82
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1b6ha_ (A:)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Periplasmic binding protein-like II
(813)
Superfamily
:
Periplasmic binding protein-like II
(813)
Family
:
Phosphate binding protein-like
(463)
Protein domain
:
Oligo-peptide binding protein (OPPA)
(34)
Salmonella typhimurium [TaxId: 90371]
(32)
1a
d1b6ha_
A:
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CATH Domains
(3, 3)
Info
all CATH domains
1a: CATH_1b6hA01 (A:1-44,A:169-270,A:487-517)
2a: CATH_1b6hA02 (A:45-168)
3a: CATH_1b6hA03 (A:271-486)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
D-Maltodextrin-Binding Protein; domain 2
(600)
Homologous Superfamily
:
Periplasmic binding protein-like II
(486)
Salmonella typhimurium. Organism_taxid: 602.
(8)
1a
1b6hA01
A:1-44,A:169-270,A:487-517
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Dipeptide-binding Protein; domain 1
(35)
Homologous Superfamily
:
Dipeptide-binding Protein; Domain 1
(35)
Salmonella typhimurium. Organism_taxid: 602.
(8)
2a
1b6hA02
A:45-168
Architecture
:
Roll
(3276)
Topology
:
Dipeptide-binding Protein; domain 3
(35)
Homologous Superfamily
:
Dipeptide-binding Protein; Domain 3
(35)
Salmonella typhimurium. Organism_taxid: 602.
(8)
3a
1b6hA03
A:271-486
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Asym.Unit (102 KB)
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