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1B6C
Biol. Unit 3
Info
Asym.Unit (282 KB)
Biol.Unit 1 (73 KB)
Biol.Unit 2 (73 KB)
Biol.Unit 3 (72 KB)
Biol.Unit 4 (73 KB)
Biol.Unit 5 (277 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE CYTOPLASMIC DOMAIN OF THE TYPE I TGF-BETA RECEPTOR IN COMPLEX WITH FKBP12
Authors
:
M. Huse, Y. -G. Chen, J. Massague, J. Kuriyan
Date
:
13 Jan 99 (Deposition) - 15 Jun 99 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Biol. Unit 4: G,H (1x)
Biol. Unit 5: A,B,C,D,E,F,G,H (1x)
Keywords
:
Complex (Isomerase/Protein Kinase), Receptor Serine/Threonine Kinase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Huse, Y. G. Chen, J. Massague, J. Kuriyan
Crystal Structure Of The Cytoplasmic Domain Of The Type I Tgf Beta Receptor In Complex With Fkbp12.
Cell(Cambridge, Mass. ) V. 96 425 1999
(for further references see the
PDB file header
)
[
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: SULFATE ION (SO4a)
1b: SULFATE ION (SO4b)
1c: SULFATE ION (SO4c)
1d: SULFATE ION (SO4d)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
SO4
1
Ligand/Ion
SULFATE ION
[
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Sites
(1, 1)
Info
All Sites
1: AC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC3
SOFTWARE
ARG F:377 , LEU F:426 , ASP F:435
BINDING SITE FOR RESIDUE SO4 F 504
[
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SAPs(SNPs)/Variants
(13, 13)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
01: VAR_022344 (T200I, chain F, )
02: VAR_029481 (K232E, chain F, )
03: VAR_029482 (S241L, chain F, )
04: VAR_066720 (D266Y, chain F, )
05: VAR_029483 (N267H, chain F, )
06: VAR_041413 (Y291C, chain F, )
07: VAR_022345 (M318R, chain F, )
08: VAR_066721 (D351G, chain F, )
09: VAR_066722 (T375I, chain F, )
10: VAR_022346 (D400G, chain F, )
11: VAR_022347 (R487P, chain F, )
12: VAR_029484 (R487Q, chain F, )
13: VAR_029485 (R487W, chain F, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_022344
T
200
I
TGFR1_HUMAN
Disease (LDS1)
---
F
T
200
I
02
UniProt
VAR_029481
K
232
E
TGFR1_HUMAN
Disease (LDS1)
---
F
K
232
E
03
UniProt
VAR_029482
S
241
L
TGFR1_HUMAN
Disease (LDS1)
---
F
S
241
L
04
UniProt
VAR_066720
D
266
Y
TGFR1_HUMAN
Disease (LDS1)
---
F
D
266
Y
05
UniProt
VAR_029483
N
267
H
TGFR1_HUMAN
Unclassified
---
F
N
267
H
06
UniProt
VAR_041413
Y
291
C
TGFR1_HUMAN
Polymorphism
35974499
F
Y
291
C
07
UniProt
VAR_022345
M
318
R
TGFR1_HUMAN
Disease (LDS1)
---
F
M
318
R
08
UniProt
VAR_066721
D
351
G
TGFR1_HUMAN
Disease (LDS1)
---
F
D
351
G
09
UniProt
VAR_066722
T
375
I
TGFR1_HUMAN
Disease (LDS1)
---
F
T
375
I
10
UniProt
VAR_022346
D
400
G
TGFR1_HUMAN
Disease (LDS1)
---
F
D
400
G
11
UniProt
VAR_022347
R
487
P
TGFR1_HUMAN
Disease (LDS1)
---
F
R
487
P
12
UniProt
VAR_029484
R
487
Q
TGFR1_HUMAN
Disease (LDS1)
---
F
R
487
Q
13
UniProt
VAR_029485
R
487
W
TGFR1_HUMAN
Disease (LDS1)
---
F
R
487
W
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(4, 4)
Info
All PROSITE Patterns/Profiles
1: FKBP_PPIASE (E:19-107)
2: GS (F:175-204)
3: PROTEIN_KINASE_ATP (F:211-232)
4: PROTEIN_KINASE_ST (F:329-341)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FKBP_PPIASE
PS50059
FKBP-type peptidyl-prolyl cis-trans isomerase domain profile.
FKB1A_HUMAN
20-108
1
-
-
E:19-107
-
2
GS
PS51256
GS domain profile.
TGFR1_HUMAN
175-204
1
-
-
F:175-204
-
3
PROTEIN_KINASE_ATP
PS00107
Protein kinases ATP-binding region signature.
TGFR1_HUMAN
211-232
1
-
-
F:211-232
-
4
PROTEIN_KINASE_ST
PS00108
Serine/Threonine protein kinases active-site signature.
TGFR1_HUMAN
329-341
1
-
-
F:329-341
-
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d1b6ca_ (A:)
1b: SCOP_d1b6cc_ (C:)
1c: SCOP_d1b6ce_ (E:)
1d: SCOP_d1b6cg_ (G:)
2a: SCOP_d1b6cb_ (B:)
2b: SCOP_d1b6cf_ (F:)
2c: SCOP_d1b6ch_ (H:)
2d: SCOP_d1b6cd_ (D:)
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(
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(
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(
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
FKBP-like
(309)
Superfamily
:
FKBP-like
(198)
Family
:
FKBP immunophilin/proline isomerase
(153)
Protein domain
:
FK-506 binding protein (FKBP12), an immunophilin
(44)
Human (Homo sapiens) [TaxId: 9606]
(42)
1a
d1b6ca_
A:
1b
d1b6cc_
C:
1c
d1b6ce_
E:
1d
d1b6cg_
G:
Fold
:
Protein kinase-like (PK-like)
(2589)
Superfamily
:
Protein kinase-like (PK-like)
(2589)
Family
:
Protein kinases, catalytic subunit
(1977)
Protein domain
:
Type I TGF-beta receptor R4
(10)
Human (Homo sapiens) [TaxId: 9606]
(10)
2a
d1b6cb_
B:
2b
d1b6cf_
F:
2c
d1b6ch_
H:
2d
d1b6cd_
D:
[
close SCOP info
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CATH Domains
(3, 12)
Info
all CATH domains
1a: CATH_1b6cB01 (B:175-284)
1b: CATH_1b6cD01 (D:175-284)
1c: CATH_1b6cF01 (F:175-284)
1d: CATH_1b6cH01 (H:175-284)
2a: CATH_1b6cA00 (A:1-107)
2b: CATH_1b6cC00 (C:1-107)
2c: CATH_1b6cE00 (E:1-107)
2d: CATH_1b6cG00 (G:1-107)
3a: CATH_1b6cB02 (B:285-500)
3b: CATH_1b6cD02 (D:285-500)
3c: CATH_1b6cF02 (F:285-500)
3d: CATH_1b6cH02 (H:285-500)
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(
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(
)
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(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Phosphorylase Kinase; domain 1
(1392)
Homologous Superfamily
:
Phosphorylase Kinase; domain 1
(1392)
Human (Homo sapiens)
(1036)
1a
1b6cB01
B:175-284
1b
1b6cD01
D:175-284
1c
1b6cF01
F:175-284
1d
1b6cH01
H:175-284
Architecture
:
Roll
(3276)
Topology
:
Chitinase A; domain 3
(225)
Homologous Superfamily
:
[code=3.10.50.40, no name defined]
(98)
Human (Homo sapiens)
(72)
2a
1b6cA00
A:1-107
2b
1b6cC00
C:1-107
2c
1b6cE00
E:1-107
2d
1b6cG00
G:1-107
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Transferase(Phosphotransferase); domain 1
(1379)
Homologous Superfamily
:
Transferase(Phosphotransferase) domain 1
(1379)
Human (Homo sapiens)
(1049)
3a
1b6cB02
B:285-500
3b
1b6cD02
D:285-500
3c
1b6cF02
F:285-500
3d
1b6cH02
H:285-500
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Asymmetric Unit 1
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